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BioLiP
>dna
gaagccacatcctctg

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 6vg2:C 16 16 1.0000 1.0000 1.0000 32 6vg2:F, 6vg8:C, 6vgd:C, 6vge:C, 6vgg:C
2 3wts:D 15 15 0.9375 1.0000 1.0000 15 3wts:I, 3wtt:D, 3wtt:I, 3wtu:D, 3wtu:I, 3wtv:D, 3wtv:I, 3wtw:D, 3wtw:I, 3wtx:D, 3wtx:I, 3wty:D, 3wty:I
3 8dh1:A 16 16 0.6250 0.6250 0.6250 2 8dh3:A, 8dh3:J, 8dh5:A, 8dh5:J
4 4l0y:C 16 15 0.9375 0.9375 1.0000 0 4l0z:C, 4l18:C, 4l18:G, 3ri4:B, 3ri4:E, 3wu1:C
5 7et6:E 15 15 0.6875 0.7333 0.7333 -5
6 2ayb:C 16 16 0.5000 0.5000 0.5000 -8 2ayb:D, 1jj4:C, 1jj4:D
7 2ql2:E 16 16 0.5000 0.5000 0.5000 -8 2ql2:G
8 4o3m:T 16 16 0.5000 0.5000 0.5000 -8
9 6ryi:F 16 16 0.5000 0.5000 0.5000 -8
10 4ncb:D 15 15 0.6250 0.6667 0.6667 -10 5xp8:F
11 4hkq:F 14 14 0.6250 0.7143 0.7143 -11
12 1g2d:A 16 16 0.4375 0.4375 0.4375 -13 1g2d:D, 1g2f:A, 1g2f:D
13 1nk2:B 16 16 0.4375 0.4375 0.4375 -13 1nk3:B
14 2i9t:C 17 16 0.6250 0.5882 0.6250 -13
15 2kdz:C 16 16 0.4375 0.4375 0.4375 -13 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
16 2ql2:F 16 16 0.4375 0.4375 0.4375 -13 2ql2:H
17 2ve9:J 16 16 0.4375 0.4375 0.4375 -13 2ve9:L
18 3coa:B 16 16 0.4375 0.4375 0.4375 -13 3coa:E
19 3fyl:C 16 16 0.4375 0.4375 0.4375 -13 3g9m:C, 3g9o:D, 3g9p:D
20 3jtg:C 16 16 0.4375 0.4375 0.4375 -13
21 3mfk:C 16 16 0.4375 0.4375 0.4375 -13
22 3mfk:D 16 16 0.4375 0.4375 0.4375 -13
23 4a0a:D 16 16 0.4375 0.4375 0.4375 -13
24 4ati:C 16 16 0.4375 0.4375 0.4375 -13
25 4k8x:T 16 16 0.4375 0.4375 0.4375 -13
26 5e6b:D 16 16 0.4375 0.4375 0.4375 -13
27 5zyt:G 17 16 0.6250 0.5882 0.6250 -13
28 6isg:D 16 16 0.4375 0.4375 0.4375 -13
29 6ncm:C 16 16 0.4375 0.4375 0.4375 -13
30 6xwh:A 16 16 0.4375 0.4375 0.4375 -13
31 7eyi:A 16 16 0.4375 0.4375 0.4375 -13
32 7fji:X 17 16 0.6250 0.5882 0.6250 -13
33 7pla:C 17 16 0.6250 0.5882 0.6250 -13
34 7u32:X 17 16 0.6250 0.5882 0.6250 -13 7u32:Y
35 7x5e:C 16 16 0.4375 0.4375 0.4375 -13 7x5e:G
36 8dh1:F 17 16 0.6250 0.5882 0.6250 -13 8dh2:A, 8dh2:F, 8dh3:F, 8dh3:N, 8dh4:F, 8dh5:F, 8dh5:N, 1h38:E, 1h38:K, 1h38:N
37 8tkl:D 17 16 0.6250 0.5882 0.6250 -13
38 1yfj:1 15 15 0.5625 0.6000 0.6000 -15 1yfj:2, 1yfj:3, 1yfj:4, 1yfj:6, 1yfj:7, 1yfj:8, 1yfj:9, 1yfj:0
39 2o8b:E 15 15 0.5625 0.6000 0.6000 -15 2o8c:E, 2o8d:E
40 2o8e:E 15 15 0.5625 0.6000 0.6000 -15
41 3cvu:D 15 15 0.5625 0.6000 0.6000 -15 3cvv:D, 3cvw:D, 3cvx:D, 3cvy:D
42 7f2f:H 15 15 0.5625 0.6000 0.6000 -15
43 7n5s:Y 15 15 0.5625 0.6000 0.6000 -15
44 7n5t:Y 15 15 0.5625 0.6000 0.6000 -15
45 8dh0:E 15 15 0.5625 0.6000 0.6000 -15 8dh4:A, 8dh4:N
46 8e67:B 15 15 0.5625 0.6000 0.6000 -15 8e67:D, 8e67:J
47 1yfj:5 14 14 0.5625 0.6429 0.6429 -16
48 2rgr:D 19 16 0.6875 0.5789 0.6875 -16
49 6fn0:D 14 14 0.5625 0.6429 0.6429 -16
50 6znp:C 14 14 0.5625 0.6429 0.6429 -16 6znp:D, 6znq:C, 6znq:D
51 1h38:H 18 16 0.6250 0.5556 0.6250 -17
52 3g9j:C 18 16 0.6250 0.5556 0.6250 -17
53 5emc:C 18 16 0.6250 0.5556 0.6250 -17 5emp:D, 5emq:D
54 1by4:G 16 16 0.3750 0.3750 0.3750 -18 4cn7:C, 4cn7:G
55 1cit:C 16 16 0.3750 0.3750 0.3750 -18 7wnh:E, 7wnh:I, 7wnh:L, 7wnh:O
56 1dct:G 16 16 0.3750 0.3750 0.3750 -18
57 1egw:E 17 16 0.5625 0.5294 0.5625 -18 1egw:H, 3mu6:E, 3mu6:G
58 1hjc:B 16 16 0.3750 0.3750 0.3750 -18 1hjc:E
59 1run:D 17 16 0.5625 0.5294 0.5625 -18 1run:F, 1ruo:D, 1ruo:F
60 1s0m:D 16 16 0.3750 0.3750 0.3750 -18 1s0m:F
61 1s0v:E 17 16 0.5625 0.5294 0.5625 -18 1s0v:H, 1s0v:K, 1s0v:N
62 1vol:C 16 16 0.3750 0.3750 0.3750 -18
63 2asd:E 17 16 0.5625 0.5294 0.5625 -18 2asl:E, 2asl:J, 2atl:E, 3khh:J, 3raq:J, 3rax:J
64 2bnz:E 17 16 0.5625 0.5294 0.5625 -18
65 2d45:E 16 16 0.3750 0.3750 0.3750 -18 2d45:F, 1xsd:B
66 2ia6:F 16 16 0.3750 0.3750 0.3750 -18
67 2kmk:C 16 16 0.3750 0.3750 0.3750 -18
68 3co6:B 16 16 0.3750 0.3750 0.3750 -18
69 3gil:J 16 16 0.3750 0.3750 0.3750 -18
70 3spz:T 16 16 0.3750 0.3750 0.3750 -18
71 4ati:D 16 16 0.3750 0.3750 0.3750 -18
72 4atk:C 16 16 0.3750 0.3750 0.3750 -18 4atk:D, 5eyo:B, 5eyo:D
73 4d1q:D 16 16 0.3750 0.3750 0.3750 -18 4d1q:F, 4d1q:J, 4d1q:L
74 4e7j:T 16 16 0.3750 0.3750 0.3750 -18 3os1:T, 3os2:T
75 4fbt:T 16 16 0.3750 0.3750 0.3750 -18
76 4ol8:H 16 16 0.3750 0.3750 0.3750 -18
77 4osj:G 16 16 0.3750 0.3750 0.3750 -18 4ost:G, 4ot0:G, 4ot3:G
78 4osr:G 16 16 0.3750 0.3750 0.3750 -18 4oss:G
79 4s2q:B 16 16 0.3750 0.3750 0.3750 -18
80 4tnt:C 17 16 0.5625 0.5294 0.5625 -18
81 4tnt:D 17 16 0.5625 0.5294 0.5625 -18
82 4u7d:Q 16 16 0.3750 0.3750 0.3750 -18
83 5e6a:C 16 16 0.3750 0.3750 0.3750 -18
84 5e6a:D 16 16 0.3750 0.3750 0.3750 -18
85 5e6b:C 16 16 0.3750 0.3750 0.3750 -18
86 5gq9:D 16 16 0.3750 0.3750 0.3750 -18 5gq9:F, 5xou:D, 5xou:F, 5xq2:Y, 5xq2:F
87 5vu9:T 16 16 0.3750 0.3750 0.3750 -18
88 5xou:E 16 16 0.3750 0.3750 0.3750 -18
89 6khy:H 16 16 0.3750 0.3750 0.3750 -18
90 6kqd:G 16 16 0.3750 0.3750 0.3750 -18 6kqd:Q
91 6l6y:A 16 16 0.3750 0.3750 0.3750 -18 6l6y:C
92 6lew:C 16 16 0.3750 0.3750 0.3750 -18
93 6ncm:D 16 16 0.3750 0.3750 0.3750 -18
94 6ow3:G 16 16 0.3750 0.3750 0.3750 -18
95 6ryl:F 16 16 0.3750 0.3750 0.3750 -18 6ryl:H
96 6vg6:T 16 16 0.3750 0.3750 0.3750 -18 6vg6:C, 6vgm:C, 6vgm:T
97 7cli:C 17 16 0.5625 0.5294 0.5625 -18
98 7jk1:C 16 16 0.3750 0.3750 0.3750 -18 7jk1:G, 7jkl:C, 7jkl:G, 7jkp:C, 7jkp:G
99 7jlg:G 16 16 0.3750 0.3750 0.3750 -18
100 7mr4:A 16 16 0.3750 0.3750 0.3750 -18
101 7oyk:EEE 16 16 0.3750 0.3750 0.3750 -18 7oyk:LLL, 7oyk:GGG
102 7t18:T 16 16 0.3750 0.3750 0.3750 -18 7t19:T, 7t1a:T, 7t1b:T, 6x74:T, 6x77:T
103 7tqq:C 16 16 0.3750 0.3750 0.3750 -18 7tqq:H
104 7vov:C 16 16 0.3750 0.3750 0.3750 -18 7vox:E, 7vox:G
105 7vup:C 17 16 0.5625 0.5294 0.5625 -18
106 7yzg:C 16 16 0.3750 0.3750 0.3750 -18
107 8e14:K 16 16 0.3750 0.3750 0.3750 -18 8e14:N
108 8j9w:D 17 16 0.5625 0.5294 0.5625 -18 8j9w:F
109 8jpx:U 17 16 0.5625 0.5294 0.5625 -18 8jpx:T
110 1bc7:B 11 11 0.5625 0.8182 0.8182 -19
111 1b8i:C 15 15 0.5000 0.5333 0.5333 -20 4cyc:C, 4uus:C, 4uus:G
112 1by4:E 15 15 0.5000 0.5333 0.5333 -20
113 1dsz:C 15 15 0.5000 0.5333 0.5333 -20
114 1fn7:D 15 15 0.5000 0.5333 0.5333 -20 1hu0:E, 1lwv:E, 1lww:E, 1lwy:E, 1m3q:C, 1n39:C, 1n3a:C
115 2bgw:C 15 15 0.5000 0.5333 0.5333 -20
116 2ivk:E 15 15 0.5000 0.5333 0.5333 -20 2ivk:G
117 2lef:C 15 15 0.5000 0.5333 0.5333 -20
118 2nbj:B 15 15 0.5000 0.5333 0.5333 -20
119 2wb2:D 15 15 0.5000 0.5333 0.5333 -20 2wq6:D, 2wq7:D
120 3a5t:D 15 15 0.5000 0.5333 0.5333 -20
121 4flz:T 15 15 0.5000 0.5333 0.5333 -20
122 4osh:I 15 15 0.5000 0.5333 0.5333 -20
123 4s20:M 15 15 0.5000 0.5333 0.5333 -20 4s20:O
124 5fj8:S 15 15 0.5000 0.5333 0.5333 -20
125 5mez:D 15 15 0.5000 0.5333 0.5333 -20
126 6ryi:H 15 15 0.5000 0.5333 0.5333 -20
127 8e66:B 15 15 0.5000 0.5333 0.5333 -20 8e66:D
128 8wus:D 15 15 0.5000 0.5333 0.5333 -20 8wut:D, 8wuu:D, 8wuv:D
129 1pzu:Y 14 14 0.5000 0.5714 0.5714 -21 1pzu:Z, 1pzu:W
130 1qtm:C 14 14 0.5000 0.5714 0.5714 -21
131 2dy4:F 14 14 0.5000 0.5714 0.5714 -21
132 2jxi:D 14 14 0.5000 0.5714 0.5714 -21
133 4yfu:F 14 14 0.5000 0.5714 0.5714 -21
134 5y7g:J 14 14 0.5000 0.5714 0.5714 -21 5y7g:L
135 6b0r:F 14 14 0.5000 0.5714 0.5714 -21
136 6btf:T 14 14 0.5000 0.5714 0.5714 -21
137 8dh0:M 14 14 0.5000 0.5714 0.5714 -21 8dh1:M, 8dh2:M, 8dh4:J
138 8hcm:C 14 14 0.5000 0.5714 0.5714 -21
139 8th9:D 14 14 0.5000 0.5714 0.5714 -21
140 1kb4:D 18 16 0.5625 0.5000 0.5625 -22
141 2c7a:D 18 16 0.5625 0.5000 0.5625 -22
142 2nll:C 18 16 0.5000 0.4444 0.5000 -22
143 3bkz:B 13 13 0.5000 0.6154 0.6154 -22
144 3dvo:E 18 16 0.5625 0.5000 0.5625 -22 3dvo:F, 3dvo:G, 3dvo:H, 3dw9:E, 3dw9:F
145 3g6p:C 18 16 0.5625 0.5000 0.5625 -22 3g6r:D
146 3rma:E 14 14 0.6250 0.7143 0.7143 -22 3rmc:K
147 4n41:F 14 14 0.6250 0.7143 0.7143 -22
148 4tqs:D 13 13 0.5000 0.6154 0.6154 -22
149 5emc:D 18 16 0.5625 0.5000 0.5625 -22 5emp:C, 5emq:C
150 5y7g:N 13 13 0.5000 0.6154 0.6154 -22
151 6emy:E 18 16 0.5625 0.5000 0.5625 -22
152 6rks:G 18 16 0.5625 0.5000 0.5625 -22 6rks:H, 6rku:G, 6rku:H, 6rkv:G, 6rkv:H
153 6x6d:D 18 16 0.5625 0.5000 0.5625 -22 6x6e:D
154 7b0h:A 13 13 0.5000 0.6154 0.6154 -22 7b0h:C
155 7cli:D 18 16 0.5625 0.5000 0.5625 -22
156 7dcj:C 13 13 0.5000 0.6154 0.6154 -22
157 7f4y:T 18 16 0.5625 0.5000 0.5625 -22
158 7l4f:D 18 16 0.5625 0.5000 0.5625 -22
159 7vuq:D 18 16 0.5625 0.5000 0.5625 -22
160 8u72:V 18 16 0.5625 0.5000 0.5625 -22 8u72:N, 8u72:T, 8u72:Y
161 1cit:B 16 16 0.3125 0.3125 0.3125 -23 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
162 1d2i:C 16 16 0.3125 0.3125 0.3125 -23 1d2i:D, 1dfm:C, 1dfm:D
163 1egw:F 17 16 0.5000 0.4706 0.5000 -23 1egw:G, 3mu6:F, 3mu6:H
164 1g4d:B 16 16 0.3125 0.3125 0.3125 -23
165 1gtw:C 16 16 0.3125 0.3125 0.3125 -23
166 1gtw:D 16 16 0.3125 0.3125 0.3125 -23
167 1iaw:C 16 16 0.3125 0.3125 0.3125 -23
168 1j59:D 17 16 0.5000 0.4706 0.5000 -23 1j59:F
169 1lq1:E 16 16 0.3125 0.3125 0.3125 -23 1lq1:G
170 1n48:C 16 16 0.3125 0.3125 0.3125 -23 2va3:T
171 1o3t:D 17 16 0.5000 0.4706 0.5000 -23 1o3t:E
172 1oh6:E 16 16 0.3125 0.3125 0.3125 -23 2wtu:E
173 1pue:B 16 16 0.3125 0.3125 0.3125 -23 1pue:D
174 1ryr:C 16 16 0.3125 0.3125 0.3125 -23
175 1w0u:C 16 16 0.3125 0.3125 0.3125 -23
176 2c2r:T 16 16 0.3125 0.3125 0.3125 -23 2uvv:T, 2w8k:T, 2w8l:T, 2w9a:T, 2w9c:E, 2w9c:F
177 2fcc:D 13 13 0.5000 0.6154 0.6154 -23 2fcc:F
178 2is1:C 16 16 0.3125 0.3125 0.3125 -23
179 2ivk:I 16 16 0.3125 0.3125 0.3125 -23 2ivk:J
180 2jef:T 16 16 0.3125 0.3125 0.3125 -23 2jei:T
181 2kdz:B 16 16 0.3125 0.3125 0.3125 -23 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
182 2kmk:B 16 16 0.3125 0.3125 0.3125 -23
183 2nl8:W 18 16 0.6875 0.6111 0.6875 -23
184 2ntz:Y 16 16 0.3125 0.3125 0.3125 -23 2ntz:E
185 2o8f:E 17 16 0.5000 0.4706 0.5000 -23
186 2qnf:D 16 16 0.3125 0.3125 0.3125 -23
187 2rdj:D 16 16 0.3125 0.3125 0.3125 -23
188 2v9w:F 16 16 0.3125 0.3125 0.3125 -23 2va2:D
189 2wt7:C 16 16 0.3125 0.3125 0.3125 -23
190 3f27:A 16 16 0.3125 0.3125 0.3125 -23 3u2b:A
191 3fyl:D 16 16 0.3125 0.3125 0.3125 -23 3g9m:D, 3g9o:C, 3g9p:C
192 3g6q:D 16 16 0.3125 0.3125 0.3125 -23 3g6u:C
193 3g6t:D 16 16 0.3125 0.3125 0.3125 -23
194 3g99:C 16 16 0.3125 0.3125 0.3125 -23 3g9i:C
195 3g99:D 16 16 0.3125 0.3125 0.3125 -23 3g9i:D
196 3jtg:B 16 16 0.3125 0.3125 0.3125 -23
197 3khh:E 16 16 0.3125 0.3125 0.3125 -23
198 3l8b:C 16 16 0.3125 0.3125 0.3125 -23 3l8b:E
199 3pw7:B 16 16 0.3125 0.3125 0.3125 -23 3pw7:F
200 3rnu:K 16 16 0.3125 0.3125 0.3125 -23
201 3sjm:D 17 16 0.5000 0.4706 0.5000 -23 1w0u:D
202 4aa6:C 18 16 0.6875 0.6111 0.6875 -23 4aa6:G
203 4cgz:C 17 16 0.5000 0.4706 0.5000 -23
204 4da4:C 12 12 0.5000 0.6667 0.6667 -23 4da4:E, 7sfc:C, 7sfd:C, 7sfe:C, 7sff:C, 7sfg:C, 6x9i:C, 6x9j:C, 6x9k:C
205 4dfm:C 16 16 0.3125 0.3125 0.3125 -23 4elu:C, 5o7t:C, 5oxj:C, 3rtv:C
206 4e0p:D 16 16 0.3125 0.3125 0.3125 -23 4e0y:D, 4e0z:D
207 4fjk:T 16 16 0.3125 0.3125 0.3125 -23
208 4fjl:T 16 16 0.3125 0.3125 0.3125 -23 4fjn:T
209 4fm9:D 17 16 0.5000 0.4706 0.5000 -23 6zy5:D, 6zy5:F, 6zy6:D, 6zy6:F, 6zy7:D, 6zy7:F, 6zy8:D, 6zy8:F
210 4fyd:C 16 16 0.3125 0.3125 0.3125 -23 4fyd:D
211 4fzx:A 17 16 0.5000 0.4706 0.5000 -23
212 4g7h:G 16 16 0.3125 0.3125 0.3125 -23 4g7h:Q, 4g7o:G, 4g7o:Q, 6l74:G, 4oin:G, 4oio:G, 4oip:G, 4oiq:G, 4oir:G
213 4g7z:G 16 16 0.3125 0.3125 0.3125 -23 4g7z:Q
214 4gc6:T 16 16 0.3125 0.3125 0.3125 -23 2j6s:T, 2w9b:E, 2w9b:F
215 4iri:C 12 12 0.5000 0.6667 0.6667 -23
216 4m45:T 16 16 0.3125 0.3125 0.3125 -23
217 4osi:I 16 16 0.3125 0.3125 0.3125 -23 4osj:I
218 4q0w:C 16 16 0.3125 0.3125 0.3125 -23
219 4s2q:A 16 16 0.3125 0.3125 0.3125 -23
220 4u7d:P 17 16 0.5000 0.4706 0.5000 -23
221 5cnq:R 16 16 0.3125 0.3125 0.3125 -23 6grb:R, 6grc:R, 6grd:R
222 5e69:C 16 16 0.3125 0.3125 0.3125 -23
223 5e69:D 16 16 0.3125 0.3125 0.3125 -23
224 5e6c:C 16 16 0.3125 0.3125 0.3125 -23
225 5e6d:C 16 16 0.3125 0.3125 0.3125 -23
226 5exh:A 12 12 0.5000 0.6667 0.6667 -23 5exh:B
227 5jub:Z 17 16 0.5000 0.4706 0.5000 -23
228 5kkq:B 17 16 0.5000 0.4706 0.5000 -23 5kkq:E, 5t00:B, 5t00:E
229 5krb:A 16 16 0.3125 0.3125 0.3125 -23
230 5m0r:U 16 16 0.3125 0.3125 0.3125 -23 5m0r:V
231 5uh5:G 16 16 0.3125 0.3125 0.3125 -23
232 5uh8:G 16 16 0.3125 0.3125 0.3125 -23
233 5va0:D 16 16 0.3125 0.3125 0.3125 -23
234 5va7:D 16 16 0.3125 0.3125 0.3125 -23
235 5vrw:T 16 16 0.3125 0.3125 0.3125 -23 5vrx:T, 5vry:T, 5vrz:T, 5vs0:T, 5vs1:T, 5vs2:T, 5vs3:T, 5vs4:T
236 6bse:C 16 16 0.3125 0.3125 0.3125 -23
237 6c1u:D 12 12 0.5000 0.6667 0.6667 -23 6c1u:H
238 6cg0:I 16 16 0.3125 0.3125 0.3125 -23 6cij:I, 6dbi:I, 6dbi:J, 6dbj:I, 6dbj:J, 3jbw:I, 3jbw:J, 3jby:I, 3jby:J
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[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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