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BioLiP
>dna
cctataaaagggggtgggggcgcgttcgtcctcagtcgcgatcgaacactcgagccgagcagacgtgcctacgg

The query sequence (length=74) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fur:F 80 74 1.0000 0.9250 1.0000 3.11e-35 6mzm:U
2 5fur:E 80 74 1.0000 0.9250 1.0000 3.11e-35 6mzm:V
3 7egj:Y 74 74 1.0000 1.0000 1.0000 3.11e-35
4 7egj:X 74 74 1.0000 1.0000 1.0000 3.11e-35
5 5iyc:Y 80 72 0.9730 0.9000 1.0000 4.02e-34 5iyd:Y
6 7egd:Y 72 72 0.9730 1.0000 1.0000 4.02e-34
7 7egd:X 72 72 0.9730 1.0000 1.0000 4.02e-34
8 5iy8:Y 83 74 0.9865 0.8795 0.9865 1.45e-33 5iy9:Y
9 5iy7:Y 77 69 0.9324 0.8961 1.0000 1.87e-32
10 5iyb:Y 75 67 0.9054 0.8933 1.0000 2.42e-31
11 7eg9:Y 71 65 0.8784 0.9155 1.0000 3.13e-30
12 7eg9:X 71 65 0.8784 0.9155 1.0000 3.13e-30
13 7eg7:Y 71 64 0.8649 0.9014 1.0000 1.13e-29
14 7eg7:X 71 64 0.8649 0.9014 1.0000 1.13e-29
15 7egb:Y 69 62 0.8378 0.8986 1.0000 1.46e-28 7ena:Y, 7enc:Y
16 7egb:X 69 62 0.8378 0.8986 1.0000 1.46e-28 7ena:X, 7enc:X
17 5iy6:Y 65 57 0.7703 0.8769 1.0000 8.76e-26 6o9l:Y
18 5iy6:X 65 57 0.7703 0.8769 1.0000 8.76e-26 6o9l:X
19 7lbm:V 64 56 0.7568 0.8750 1.0000 3.15e-25
20 7lbm:U 64 56 0.7568 0.8750 1.0000 3.15e-25
21 5iya:Y 59 51 0.6892 0.8644 1.0000 1.90e-22
22 5iya:X 59 51 0.6892 0.8644 1.0000 1.90e-22
23 8gxq:Y 67 60 0.7568 0.8358 0.9333 3.17e-20 8gxs:Y
24 8gxq:X 67 60 0.7568 0.8358 0.9333 3.17e-20 8gxs:X
25 7egh:Y 45 45 0.6081 1.0000 1.0000 4.11e-19
26 7egh:X 45 45 0.6081 1.0000 1.0000 4.11e-19
27 5iy7:X 77 69 0.8108 0.7792 0.8696 1.91e-17
28 5iyb:X 75 67 0.7838 0.7733 0.8657 2.47e-16
29 7nvt:T 50 36 0.4730 0.7000 0.9722 1.92e-12
30 7nvt:N 50 33 0.4459 0.6600 1.0000 1.92e-12
31 7nvs:T 49 36 0.4730 0.7143 0.9722 1.92e-12
32 7nvs:N 49 33 0.4459 0.6735 1.0000 1.92e-12
33 7nvr:T 64 36 0.4730 0.5469 0.9722 1.92e-12 7nvy:T, 7nvz:T
34 7nvr:N 64 33 0.4459 0.5156 1.0000 1.92e-12 7nvy:N, 7nvz:N
35 5iy8:X 83 33 0.4459 0.3976 1.0000 1.92e-12 5iy9:X
36 8byq:T 198 36 0.4730 0.1768 0.9722 1.92e-12 8bz1:T
37 8byq:N 198 33 0.4459 0.1667 1.0000 1.92e-12 8bz1:N
38 8bvw:T 206 36 0.4730 0.1699 0.9722 1.92e-12
39 8bvw:N 206 33 0.4459 0.1602 1.0000 1.92e-12
40 5iyc:X 80 31 0.4189 0.3875 1.0000 2.49e-11 5iyd:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417