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BioLiP
>dna
cccgtgcactcaatgcaat

The query sequence (length=19) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
Alignment
score
Homologs
to hit
1 1b01:E 19 19 1.0000 1.0000 1.0000 38
2 1ea4:U 20 19 0.9474 0.9000 0.9474 18
3 1ea4:Y 21 19 0.9474 0.8571 0.9474 3
4 1ea4:W 22 19 0.9474 0.8182 0.9474 -1
5 4eot:C 19 19 0.4737 0.4737 0.4737 -12
6 6a47:D 19 19 0.4737 0.4737 0.4737 -12
7 6pbd:Y 19 19 0.4737 0.4737 0.4737 -12
8 8ppu:P 19 19 0.4211 0.4211 0.4211 -12 8ppv:P
9 5ejk:M 18 18 0.5789 0.6111 0.6111 -14 7jn3:I, 7jn3:K, 7ku7:I, 7ku7:K, 7kui:I, 7kui:K
10 5k97:D 18 18 0.5789 0.6111 0.6111 -14 5kse:D, 3q8k:D, 3q8l:D, 3q8m:D, 3q8m:G, 5um9:D
11 5no6:F 18 18 0.5789 0.6111 0.6111 -14 5no6:E
12 5zoe:B 18 18 0.5789 0.6111 0.6111 -14 5zof:B
13 7u1p:I 18 18 0.5789 0.6111 0.6111 -14
14 8xbw:J 18 18 0.5789 0.6111 0.6111 -14
15 8ilw:A 16 16 0.5789 0.6875 0.6875 -16
16 1d66:E 19 19 0.4211 0.4211 0.4211 -17
17 1tkd:T 19 19 0.4211 0.4211 0.4211 -17
18 1zr2:X 19 19 0.4211 0.4211 0.4211 -17 1zr2:J, 1zr4:X, 1zr4:J, 1zr4:U, 1zr4:M
19 2rbf:C 19 19 0.4211 0.4211 0.4211 -17
20 3k5m:T 20 19 0.5789 0.5500 0.5789 -17
21 3mzh:D 20 19 0.5789 0.5500 0.5789 -17
22 4e7h:D 19 19 0.4211 0.4211 0.4211 -17 4e7i:D
23 4m8b:B 20 19 0.5789 0.5500 0.5789 -17
24 4oln:F 19 19 0.4211 0.4211 0.4211 -17
25 5z6z:D 19 19 0.4211 0.4211 0.4211 -17
26 5zfw:D 19 19 0.4211 0.4211 0.4211 -17
27 5zog:C 19 19 0.4211 0.4211 0.4211 -17
28 6a47:C 19 19 0.4211 0.4211 0.4211 -17
29 6h8q:F 19 19 0.4211 0.4211 0.4211 -17
30 7z4h:D 19 19 0.4211 0.4211 0.4211 -17
31 9bdu:C 19 19 0.4211 0.4211 0.4211 -17
32 9bdw:C 19 19 0.4211 0.4211 0.4211 -17
33 1r4i:C 18 18 0.5263 0.5556 0.5556 -19
34 3vw3:B 18 18 0.5263 0.5556 0.5556 -19
35 6rid:T 18 18 0.5263 0.5556 0.5556 -19 6rie:T
36 7khc:P 18 18 0.5263 0.5556 0.5556 -19 7szk:Y
37 8ojd:C 23 19 0.6842 0.5652 0.6842 -19
38 3maq:T 17 17 0.5263 0.5882 0.5882 -20
39 4fj8:T 17 17 0.5263 0.5882 0.5882 -20
40 4fzx:A 17 17 0.5263 0.5882 0.5882 -20
41 1awc:E 21 19 0.5263 0.4762 0.5263 -21
42 1d5y:M 21 19 0.5789 0.5238 0.5789 -21 1d5y:O
43 1ea4:V 21 19 0.5789 0.5238 0.5789 -21 1ea4:Z
44 1s76:T 21 19 0.5789 0.5238 0.5789 -21 1s77:T
45 1tk0:T 16 16 0.5263 0.6250 0.6250 -21
46 3g73:D 21 19 0.5789 0.5238 0.5789 -21 6o3t:D
47 5o6u:H 21 19 0.5789 0.5238 0.5789 -21
48 6chv:I 21 19 0.5789 0.5238 0.5789 -21 6chv:E, 6chv:K
49 6p1a:D 21 19 0.5789 0.5238 0.5789 -21 6p1a:F
50 6xwg:A 21 19 0.5789 0.5238 0.5789 -21
51 8vdh:D 16 16 0.5263 0.6250 0.6250 -21
52 1d66:D 19 19 0.3684 0.3684 0.3684 -22
53 1gm5:Y 20 19 0.5263 0.5000 0.5263 -22
54 1lb2:K 20 19 0.5263 0.5000 0.5263 -22 3n4m:D
55 1p51:E 19 19 0.3684 0.3684 0.3684 -22 1p51:F, 1p51:I, 1p51:H
56 1srs:C 19 19 0.3684 0.3684 0.3684 -22
57 1srs:W 19 19 0.3684 0.3684 0.3684 -22
58 2hmi:E 19 19 0.3684 0.3684 0.3684 -22 1j5o:T
59 3bdn:D 19 19 0.3684 0.3684 0.3684 -22 7jvt:F
60 3c2p:D 19 19 0.3684 0.3684 0.3684 -22
61 3e0d:D 19 19 0.3684 0.3684 0.3684 -22 3e0d:F
62 3ei2:H 15 15 0.5263 0.6667 0.6667 -22
63 3mgv:F 20 19 0.5263 0.5000 0.5263 -22 3mgv:H, 3mgv:K, 3mgv:M
64 3pov:C 19 19 0.3684 0.3684 0.3684 -22
65 3pt6:C 19 19 0.3684 0.3684 0.3684 -22 3pt6:D, 3pta:B
66 4d8j:N 19 19 0.3684 0.3684 0.3684 -22 4d8j:F, 4d8j:J, 4d8j:P
67 4hca:Y 20 19 0.5263 0.5000 0.5263 -22
68 5ciz:D 20 19 0.5263 0.5000 0.5263 -22
69 5iwm:E 20 19 0.5263 0.5000 0.5263 -22
70 5x21:G 19 19 0.3684 0.3684 0.3684 -22
71 5x22:G 19 19 0.3684 0.3684 0.3684 -22 5x22:Q
72 5zfy:D 19 19 0.3684 0.3684 0.3684 -22
73 5zfz:D 19 19 0.3684 0.3684 0.3684 -22
74 6h8q:C 19 19 0.3684 0.3684 0.3684 -22
75 6oy5:G 19 19 0.3684 0.3684 0.3684 -22
76 6pbd:X 19 19 0.3684 0.3684 0.3684 -22
77 6ryd:D 16 16 0.6316 0.7500 0.7500 -22 6ryd:H
78 6sa0:C 15 15 0.5263 0.6667 0.6667 -22 6sa0:F, 6sa1:F
79 7fj2:C 20 19 0.5263 0.5000 0.5263 -22 7fj2:D, 7fj2:G, 7fj2:H, 6lbi:A, 6lbi:B, 6lbi:E, 6lbi:F, 6lbi:I, 6lbi:J
80 7jm4:D 19 19 0.3684 0.3684 0.3684 -22 7jm4:C, 7rh2:C, 7rh2:D
81 7kle:T 19 19 0.3684 0.3684 0.3684 -22 7klf:T
82 7ob9:S 19 19 0.3684 0.3684 0.3684 -22
83 7ve5:D 19 19 0.3684 0.3684 0.3684 -22
84 8g5i:T 19 19 0.3684 0.3684 0.3684 -22
85 8g5j:T 20 19 0.5263 0.5000 0.5263 -22
86 8jkn:A 19 19 0.3684 0.3684 0.3684 -22 8jkn:E
87 8sfq:D 19 19 0.3684 0.3684 0.3684 -22 8sfr:D
88 8spq:D 19 19 0.3684 0.3684 0.3684 -22
89 8srs:D 19 19 0.3684 0.3684 0.3684 -22
90 8ssu:B 19 19 0.3684 0.3684 0.3684 -22
91 1rm1:E 18 18 0.4737 0.5000 0.5000 -24
92 2nl8:W 18 18 0.4737 0.5000 0.5000 -24
93 2nll:C 18 18 0.4737 0.5000 0.5000 -24
94 2p5l:A 18 18 0.4737 0.5000 0.5000 -24 2p5l:E
95 2w7n:F 18 18 0.4737 0.5000 0.5000 -24 2w7n:H
96 3g6p:C 18 18 0.4737 0.5000 0.5000 -24 3g6r:D
97 3gij:E 18 18 0.4737 0.5000 0.5000 -24 3gik:E, 3gil:E, 3gim:E, 3khl:J, 3khr:J
98 3ksb:F 18 18 0.4737 0.5000 0.5000 -24
99 3u3w:Y 18 18 0.4737 0.5000 0.5000 -24
100 4m3t:T 18 18 0.4737 0.5000 0.5000 -24
101 4m3x:T 18 18 0.4737 0.5000 0.5000 -24 4m3z:T, 3qev:T
102 4q4z:G 18 18 0.4737 0.5000 0.5000 -24
103 5cbx:D 18 18 0.4737 0.5000 0.5000 -24 5cbx:G, 5cby:D, 5cbz:D, 5cbz:H, 5cc1:D, 5cc1:Y, 4oor:J, 4oor:L, 4ov7:J, 4ov7:L
104 5nnx:C 18 18 0.4737 0.5000 0.5000 -24
105 5vpe:G 18 18 0.4737 0.5000 0.5000 -24 5vpe:E
106 5yej:D 19 18 0.6316 0.6316 0.6667 -24 5yej:G
107 6lb3:J 18 18 0.4737 0.5000 0.5000 -24 6lb3:L
108 7ce1:a 18 18 0.4737 0.5000 0.5000 -24 7ce1:b, 7ce1:c, 7ce1:d, 7ce1:o
109 7dpe:B 18 18 0.4737 0.5000 0.5000 -24
110 8bzm:C 18 18 0.4737 0.5000 0.5000 -24
111 8df9:W 18 18 0.4737 0.5000 0.5000 -24
112 8dq1:J 18 18 0.4737 0.5000 0.5000 -24
113 8ia3:G 18 18 0.4737 0.5000 0.5000 -24
114 8r7y:F 18 18 0.4737 0.5000 0.5000 -24 8r7y:G
115 8sfp:D 18 18 0.4737 0.5000 0.5000 -24
116 1dmu:F 17 17 0.4737 0.5294 0.5294 -25
117 1ea4:X 22 19 0.5789 0.5000 0.5789 -25
118 1efa:D 17 17 0.4737 0.5294 0.5294 -25 2pe5:D
119 1gxp:D 23 19 0.7368 0.6087 0.7368 -25 1gxp:H
120 1lei:D 17 17 0.3684 0.4118 0.4118 -25
121 1qp4:M 17 17 0.4737 0.5294 0.5294 -25 1qqb:M
122 2kek:C 23 19 0.7368 0.6087 0.7368 -25
123 3k57:T 17 17 0.4737 0.5294 0.5294 -25
124 3k58:T 17 17 0.4737 0.5294 0.5294 -25
125 3k59:T 17 17 0.4737 0.5294 0.5294 -25
126 3zql:E 17 17 0.4737 0.5294 0.5294 -25 3zql:G
127 4cn3:E 17 17 0.4737 0.5294 0.5294 -25 4cn3:G
128 4cn5:C 17 17 0.4737 0.5294 0.5294 -25
129 4fjg:T 17 17 0.4737 0.5294 0.5294 -25
130 4fji:T 17 17 0.4737 0.5294 0.5294 -25 3qno:T
131 4rea:E 17 17 0.4737 0.5294 0.5294 -25
132 5ybb:I 22 19 0.5789 0.5000 0.5789 -25
133 5zup:E 17 17 0.4737 0.5294 0.5294 -25
134 6l8e:H 22 19 0.5789 0.5000 0.5789 -25
135 6ozi:C 17 17 0.4737 0.5294 0.5294 -25
136 6ph5:T 17 17 0.4737 0.5294 0.5294 -25
137 7mr4:X 17 17 0.4737 0.5294 0.5294 -25
138 7vup:C 17 17 0.4737 0.5294 0.5294 -25
139 8ia3:C 17 17 0.4737 0.5294 0.5294 -25
140 1dh3:B 21 19 0.5263 0.4762 0.5263 -26 1dh3:D
141 1exi:M 21 19 0.5263 0.4762 0.5263 -26 1exj:M
142 1hjc:C 16 16 0.4737 0.5625 0.5625 -26 1hjc:F
143 1tkd:P 16 16 0.4737 0.5625 0.5625 -26
144 1yfh:E 16 16 0.4737 0.5625 0.5625 -26 1yfh:G
145 1zrc:X 21 19 0.5263 0.4762 0.5263 -26 1zrc:Z
146 1zrf:X 21 19 0.5263 0.4762 0.5263 -26 1zrf:Z
147 1zrf:Y 16 16 0.4737 0.5625 0.5625 -26
148 2fvq:B 16 16 0.4737 0.5625 0.5625 -26
149 2gli:D 21 19 0.5263 0.4762 0.5263 -26
150 2hdd:D 21 19 0.5263 0.4762 0.5263 -26 2hos:D, 2hot:D
151 3dnv:T 21 19 0.5263 0.4762 0.5263 -26 3hzi:T
152 3fyl:D 16 16 0.4737 0.5625 0.5625 -26 3g9m:D, 3g9o:C, 3g9p:C
153 3g8u:D 16 16 0.4737 0.5625 0.5625 -26 3g8x:D, 3g97:C
154 3zkc:D 21 19 0.5263 0.4762 0.5263 -26
155 4e7j:T 16 16 0.4737 0.5625 0.5625 -26 3os1:T, 3os2:T
156 4m45:T 16 16 0.4737 0.5625 0.5625 -26
157 4y60:B 17 16 0.6316 0.7059 0.7500 -26
158 5wc9:D 21 19 0.5263 0.4762 0.5263 -26
159 6erf:P 16 16 0.4737 0.5625 0.5625 -26
160 7ju3:C 21 19 0.5263 0.4762 0.5263 -26
161 7nx5:C 16 16 0.4737 0.5625 0.5625 -26
162 7r6r:C 21 19 0.5263 0.4762 0.5263 -26 7tz1:C
163 7x5f:C 16 16 0.4737 0.5625 0.5625 -26 7x5f:G, 7x5g:C, 7x5g:G
164 8e3r:D 16 16 0.4737 0.5625 0.5625 -26 8ej8:D
165 8e4h:D 16 16 0.4737 0.5625 0.5625 -26 8vdi:D
166 8eqk:D 16 16 0.4737 0.5625 0.5625 -26 8eql:D
167 8pia:E 21 19 0.5263 0.4762 0.5263 -26
168 8sqh:D 17 17 0.5789 0.6471 0.6471 -26
169 9bvd:B 17 16 0.6316 0.7059 0.7500 -26 9bvd:E, 9bvd:H
170 1c7u:C 20 19 0.4737 0.4500 0.4737 -27 1c7u:D
171 1crx:D 19 19 0.3158 0.3158 0.3158 -27 1crx:F, 1drg:C, 1f44:N
172 1d5y:N 21 19 0.6316 0.5714 0.6316 -27 1d5y:P
173 1glu:C 19 19 0.3158 0.3158 0.3158 -27 1glu:D, 1r4o:C, 1r4o:D
174 1ign:C 19 19 0.3158 0.3158 0.3158 -27
175 1ign:D 19 19 0.3158 0.3158 0.3158 -27 1ign:F
176 1kqq:C 15 15 0.4737 0.6000 0.6000 -27
177 1l3l:E 20 19 0.4737 0.4500 0.4737 -27 1l3l:F, 1l3l:G, 1l3l:H
178 1msw:T 20 19 0.4737 0.4500 0.4737 -27
179 1o4x:D 19 19 0.3158 0.3158 0.3158 -27
180 1p8k:D 15 15 0.4737 0.6000 0.6000 -27
181 1r4r:C 19 19 0.3158 0.3158 0.3158 -27
182 1tk8:T 20 19 0.4737 0.4500 0.4737 -27
183 1y1w:T 19 19 0.3158 0.3158 0.3158 -27
184 1zrf:W 15 15 0.4737 0.6000 0.6000 -27
185 2ajq:P 20 19 0.4737 0.4500 0.4737 -27
186 2asd:J 19 19 0.3158 0.3158 0.3158 -27 2atl:J, 3gii:E, 3khg:E, 3rb0:E, 3rb3:E
187 2rgr:D 19 19 0.3158 0.3158 0.3158 -27
188 2wty:C 20 19 0.4737 0.4500 0.4737 -27
189 3bdn:C 19 19 0.3158 0.3158 0.3158 -27 7jvt:E
190 3i4n:T 20 19 0.4737 0.4500 0.4737 -27
191 3po2:T 19 19 0.3158 0.3158 0.3158 -27
192 3pt6:I 19 19 0.3158 0.3158 0.3158 -27 3pt6:J, 3pta:C
193 3s8q:D 19 19 0.3158 0.3158 0.3158 -27
194 3zlj:E 19 19 0.3158 0.3158 0.3158 -27
195 4a09:H 15 15 0.4737 0.6000 0.6000 -27
196 4a3f:T 20 19 0.4737 0.4500 0.4737 -27
197 4bul:H 20 19 0.4737 0.4500 0.4737 -27 5iwi:E
198 4d8j:M 19 19 0.3158 0.3158 0.3158 -27 4d8j:E, 4d8j:I, 4d8j:O
199 4j19:C 19 19 0.3158 0.3158 0.3158 -27 1w0t:C
200 4oln:E 19 19 0.3158 0.3158 0.3158 -27
201 4ri8:G 19 19 0.3158 0.3158 0.3158 -27 4ri8:J
202 4s0h:D 19 19 0.3158 0.3158 0.3158 -27 4s0h:H
203 4wzs:E 20 19 0.4737 0.4500 0.4737 -27
204 4z5c:D 20 19 0.4737 0.4500 0.4737 -27
205 5edn:E 19 19 0.3158 0.3158 0.3158 -27 5edn:F, 5edn:I, 5edn:L
206 5edw:T 19 19 0.3158 0.3158 0.3158 -27
207 5h9e:M 19 19 0.3158 0.3158 0.3158 -27
208 5va0:C 16 16 0.5789 0.6875 0.6875 -27
209 5wc9:H 20 19 0.4737 0.4500 0.4737 -27
210 6d9l:J 20 19 0.4737 0.4500 0.4737 -27
211 6edc:C 15 15 0.4737 0.6000 0.6000 -27
212 6eu1:R 19 19 0.3158 0.3158 0.3158 -27
213 6fm4:E 19 19 0.3158 0.3158 0.3158 -27
214 6l6q:C 20 19 0.4737 0.4500 0.4737 -27 6l6q:F
215 6ml3:E 20 19 0.4737 0.4500 0.4737 -27
216 6ml5:E 20 19 0.4737 0.4500 0.4737 -27 6ml6:E, 6ml7:E
217 6qx2:v 19 19 0.3158 0.3158 0.3158 -27
218 6uir:T 20 19 0.4737 0.4500 0.4737 -27
219 6yww:B 20 19 0.4737 0.4500 0.4737 -27
220 7bca:D 19 19 0.3158 0.3158 0.3158 -27
221 7du2:Y 19 19 0.3158 0.3158 0.3158 -27
222 7pzb:C 19 19 0.3158 0.3158 0.3158 -27
223 7rpo:X 20 19 0.4737 0.4500 0.4737 -27 7rpw:X
224 7taw:X 19 19 0.3158 0.3158 0.3158 -27 7tax:X
225 7taw:Y 19 19 0.3158 0.3158 0.3158 -27 7tax:Y
226 7ubl:B 19 19 0.3158 0.3158 0.3158 -27
227 7vjm:D 20 19 0.4737 0.4500 0.4737 -27
228 7z4d:H 19 19 0.3158 0.3158 0.3158 -27
229 7zpp:R 19 19 0.3158 0.3158 0.3158 -27 7zpp:T
230 8a8j:X 19 19 0.3158 0.3158 0.3158 -27
231 8asc:C 19 19 0.3158 0.3158 0.3158 -27 8asc:M
232 8efc:F 19 19 0.3158 0.3158 0.3158 -27
233 8f3c:A 19 19 0.3158 0.3158 0.3158 -27 8g00:A, 8g2w:A, 8g4w:A, 8g7e:A
234 8jfr:F 19 19 0.3158 0.3158 0.3158 -27 8jfr:H, 8jfu:F, 8jfu:H
235 8jkl:A 19 19 0.3158 0.3158 0.3158 -27 8jkl:E, 8jko:A, 8jko:E
236 8jkq:A 19 19 0.3158 0.3158 0.3158 -27 8jkq:C
237 8jks:A 19 19 0.3158 0.3158 0.3158 -27 8jks:E
238 8u8l:D 19 19 0.3158 0.3158 0.3158 -27
239 1o3t:C 14 14 0.4737 0.6429 0.6429 -28 1o3t:F
240 4zm0:H 14 14 0.4737 0.6429 0.6429 -28 4zm2:F
241 1hcq:D 18 18 0.4211 0.4444 0.4444 -29 1hcq:H
242 1ign:E 18 18 0.4211 0.4444 0.4444 -29
243 1kb2:C 18 18 0.4211 0.4444 0.4444 -29
244 1q9y:T 18 18 0.4211 0.4444 0.4444 -29
245 1rys:D 18 18 0.4211 0.4444 0.4444 -29 1rys:F
246 1ynw:C 18 18 0.4211 0.4444 0.4444 -29
247 1z19:C 13 13 0.4737 0.6923 0.6923 -29
248 2c7a:C 18 18 0.4211 0.4444 0.4444 -29
249 2c7a:D 18 18 0.4211 0.4444 0.4444 -29
250 2gm4:X 18 18 0.4211 0.4444 0.4444 -29
251 2r8i:T 18 18 0.4211 0.4444 0.4444 -29
252 2r9l:F 13 13 0.4737 0.6923 0.6923 -29
253 2rba:D 23 19 0.5789 0.4783 0.5789 -29 3uo7:D, 3uob:D
254 2v9w:D 18 18 0.4211 0.4444 0.4444 -29 2va2:F
255 2w7n:E 18 18 0.4211 0.4444 0.4444 -29 2w7n:G
256 3cfp:T 18 18 0.4211 0.4444 0.4444 -29 3cq8:T, 1ig9:T, 6isf:D, 6isf:F, 4khq:T, 4khs:T, 4khu:T, 4khw:T, 4ki4:T, 4ki6:T
257 3g9j:D 18 18 0.4211 0.4444 0.4444 -29
258 3h3v:T 18 18 0.4211 0.4444 0.4444 -29
259 3k5l:T 18 18 0.4211 0.4444 0.4444 -29
260 3ksb:E 18 18 0.4211 0.4444 0.4444 -29
261 3m9o:T 18 18 0.4211 0.4444 0.4444 -29
262 3qet:T 18 18 0.4211 0.4444 0.4444 -29 3qew:T, 3qex:T
263 3tab:E 18 18 0.4211 0.4444 0.4444 -29 3tab:G, 3tab:I, 3tab:K, 3tae:E, 3taf:E, 3taf:G, 3taf:I, 3taf:K, 3tag:E
264 3ufj:D 23 19 0.5789 0.4783 0.5789 -29 3ufj:F
265 4dtr:T 18 18 0.4211 0.4444 0.4444 -29 4dts:T, 4dtu:T, 4dtx:T, 4fjj:T, 3qei:T, 3qep:T, 3qer:T, 3qes:T, 3rwu:T
266 4du1:T 18 18 0.4211 0.4444 0.4444 -29 4fj5:T, 4j2b:T
267 4fj7:T 18 18 0.4211 0.4444 0.4444 -29 4j2e:T
268 4fjx:T 18 18 0.4211 0.4444 0.4444 -29 3lzi:T, 3lzj:T, 3nci:T, 3ndk:T, 3ne6:T, 3ngi:T, 3nhg:T, 3snn:T
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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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