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BioLiP
>dna
cccggtgccgaggccgctcttttggacgaagacagcacaagcaccgcaaaaacgcacgaacgcgcagacccccgcgaaaa
aaccgccaaggggaaaacacccaagacaccaggcacgagacagaaaaaaacaacgaaaacggccaccacccaaacacacc
aaacac

The query sequence (length=166) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xsz:T 166 166 1.0000 1.0000 1.0000 5.36e-86
2 7xsz:N 155 132 0.7952 0.8516 1.0000 4.26e-67
3 6a5o:T 178 166 0.8976 0.8371 0.8976 1.20e-57 8jh4:T
4 6j4w:T 171 163 0.8795 0.8538 0.8957 5.59e-56
5 7unc:T 155 145 0.8012 0.8581 0.9172 2.60e-54
6 6a5p:T 168 160 0.8614 0.8512 0.8938 2.60e-54
7 6a5o:N 169 158 0.8494 0.8343 0.8924 3.37e-53
8 7und:T 131 124 0.6687 0.8473 0.8952 5.71e-41
9 7xtd:T 123 107 0.5964 0.8049 0.9252 7.39e-40
10 8jh4:N 166 166 0.8253 0.8253 0.8253 2.68e-34
11 7xtd:N 112 70 0.4217 0.6250 1.0000 1.25e-32
12 7unc:N 140 73 0.4337 0.5143 0.9863 1.25e-32
13 7xt7:T 126 118 0.5904 0.7778 0.8305 5.83e-26
14 7xsx:T 108 108 0.5301 0.8148 0.8148 2.11e-20

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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