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BioLiP
>dna
ccagctccctgctggctccgagtgggttctgccgctct

The query sequence (length=38) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8w8e:T 45 38 1.0000 0.8444 1.0000 1.38e-15 8w8f:T
2 8oeu:T 38 38 1.0000 1.0000 1.0000 1.38e-15 8oev:T, 8oew:T
3 6gmh:T 48 38 1.0000 0.7917 1.0000 1.38e-15 6ted:T
4 8a40:T 41 38 1.0000 0.9268 1.0000 1.38e-15
5 8a3y:T 138 38 1.0000 0.2754 1.0000 1.38e-15
6 8of0:T 37 37 0.9737 1.0000 1.0000 4.95e-15
7 7b0y:T 37 36 0.9474 0.9730 1.0000 1.78e-14
8 7ycx:d 45 38 0.9737 0.8222 0.9737 6.40e-14
9 8p4b:T 35 35 0.9211 1.0000 1.0000 6.40e-14

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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