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BioLiP
>dna
agtcattcatgaccttggt

The query sequence (length=19) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 3foe:F 19 19 1.0000 1.0000 1.0000 38 3fof:F
2 4p0s:J 19 19 0.5263 0.5263 0.5263 -7 4p0s:N, 4p0s:R, 4p0s:V
3 1kb4:D 18 18 0.6316 0.6667 0.6667 -9
4 8bx1:D 21 19 0.6842 0.6190 0.6842 -11
5 3kmd:E 19 19 0.4737 0.4737 0.4737 -12 3kmd:F
6 3us2:F 19 19 0.4737 0.4737 0.4737 -12 3us2:L
7 6rin:N 19 19 0.4737 0.4737 0.4737 -12
8 7omg:T 20 19 0.5789 0.5500 0.5789 -12
9 2z33:C 16 16 0.5789 0.6875 0.6875 -16
10 5wc9:C 21 19 0.6316 0.5714 0.6316 -16 5wc9:G
11 8oo9:L 21 19 0.6316 0.5714 0.6316 -16
12 2ja8:T 19 19 0.4211 0.4211 0.4211 -17
13 2rgr:D 19 19 0.4211 0.4211 0.4211 -17
14 3us2:E 19 19 0.4211 0.4211 0.4211 -17 3us2:K
15 4a3k:T 19 19 0.3684 0.3684 0.3684 -17
16 5mhk:G 19 19 0.4211 0.4211 0.4211 -17
17 5ot2:T 19 19 0.4211 0.4211 0.4211 -17
18 6fj5:F 20 19 0.5789 0.5500 0.5789 -17 6fj5:G
19 7rte:A 15 15 0.5789 0.7333 0.7333 -17 7rti:A, 6wqu:A
20 8a8j:X 19 19 0.4211 0.4211 0.4211 -17
21 8g9o:D 20 19 0.5263 0.5000 0.5263 -17 8v6i:F, 8v6j:F
22 8svd:B 19 19 0.4211 0.4211 0.4211 -17
23 8tll:C 19 19 0.4211 0.4211 0.4211 -17
24 8txo:T 19 19 0.4211 0.4211 0.4211 -17
25 9bdu:C 19 19 0.4211 0.4211 0.4211 -17
26 9cf1:T 19 19 0.4211 0.4211 0.4211 -17
27 5k97:D 18 18 0.5263 0.5556 0.5556 -19 5kse:D, 3q8k:D, 3q8l:D, 3q8m:D, 3q8m:G, 5um9:D
28 1oh5:F 17 17 0.5263 0.5882 0.5882 -20
29 4gjr:I 17 17 0.5263 0.5882 0.5882 -20 4gjr:G
30 7l4f:G 17 17 0.5263 0.5882 0.5882 -20
31 8c41:F 11 11 0.5789 1.0000 1.0000 -21 4juo:F, 3k9f:F, 4koe:F, 4kpe:F, 4kpf:F, 3ksa:F, 3ltn:F, 3rad:F, 3rae:F, 3raf:F, 4z3o:F, 4z53:F
32 1d66:E 19 19 0.3684 0.3684 0.3684 -22
33 1h9t:X 19 19 0.3684 0.3684 0.3684 -22
34 1lb2:K 20 19 0.5263 0.5000 0.5263 -22 3n4m:D
35 1o4x:C 19 19 0.3684 0.3684 0.3684 -22
36 1puf:D 20 19 0.5263 0.5000 0.5263 -22
37 1svc:D 19 19 0.3684 0.3684 0.3684 -22
38 1tc3:B 20 19 0.5263 0.5000 0.5263 -22
39 1tkd:T 19 19 0.3684 0.3684 0.3684 -22
40 1y1w:T 19 19 0.3684 0.3684 0.3684 -22
41 2c9l:A 19 19 0.3684 0.3684 0.3684 -22
42 2hap:A 20 19 0.5263 0.5000 0.5263 -22 1qp9:E, 1qp9:G
43 2ief:E 19 19 0.3684 0.3684 0.3684 -22
44 2ja6:T 19 19 0.3684 0.3684 0.3684 -22
45 3brd:C 15 15 0.5263 0.6667 0.6667 -22 3brf:C, 3brg:A, 6dks:A, 6dks:E, 5e24:G, 5eg6:B, 2fo1:C, 4j2x:E, 4j2x:G, 1ttu:C
46 3how:1 19 19 0.3684 0.3684 0.3684 -22
47 3iag:A 15 15 0.5263 0.6667 0.6667 -22
48 3pov:D 19 19 0.3684 0.3684 0.3684 -22
49 3zlj:E 19 19 0.3684 0.3684 0.3684 -22
50 4iqr:D 20 19 0.5263 0.5000 0.5263 -22 4iqr:H
51 4plb:F 19 19 0.3684 0.3684 0.3684 -22 2xcs:F
52 4wwc:E 19 19 0.3684 0.3684 0.3684 -22 4wwc:F
53 4zcf:D 20 19 0.5263 0.5000 0.5263 -22
54 5cqq:E 19 19 0.3684 0.3684 0.3684 -22
55 5h9e:M 19 19 0.3684 0.3684 0.3684 -22
56 6kks:B 19 19 0.3684 0.3684 0.3684 -22
57 6lmj:C 19 19 0.3684 0.3684 0.3684 -22 6lmj:D
58 6oy5:G 19 19 0.3684 0.3684 0.3684 -22
59 6wvj:T 19 19 0.3684 0.3684 0.3684 -22
60 7f2f:H 15 15 0.5263 0.6667 0.6667 -22
61 7q5b:t 19 19 0.3684 0.3684 0.3684 -22 7q5b:u
62 8a8j:Y 19 19 0.3684 0.3684 0.3684 -22
63 8csz:E 19 19 0.3684 0.3684 0.3684 -22
64 8spq:E 19 19 0.3684 0.3684 0.3684 -22 8sqh:c, 8srs:c
65 8tll:X 20 19 0.5263 0.5000 0.5263 -22
66 9bdw:C 19 19 0.3684 0.3684 0.3684 -22
67 9ezy:E 19 19 0.3684 0.3684 0.3684 -22
68 8fyc:I 14 14 0.5263 0.7143 0.7143 -23
69 1kb6:D 18 18 0.4737 0.5000 0.5000 -24
70 2c9l:B 18 18 0.4737 0.5000 0.5000 -24
71 3hou:1 18 18 0.4737 0.5000 0.5000 -24 3hou:4
72 3hox:T 18 18 0.4211 0.4444 0.4444 -24
73 4q4z:G 18 18 0.4737 0.5000 0.5000 -24
74 5ua1:D 18 18 0.4737 0.5000 0.5000 -24 5ua1:F
75 6a2i:C 18 18 0.4737 0.5000 0.5000 -24 6a2i:D
76 6kvo:D 18 18 0.4737 0.5000 0.5000 -24
77 6lb3:I 18 18 0.4737 0.5000 0.5000 -24 6lb3:K
78 6w64:C 18 18 0.4737 0.5000 0.5000 -24
79 7l4f:D 18 18 0.4737 0.5000 0.5000 -24
80 7l4m:D 18 18 0.4737 0.5000 0.5000 -24
81 7m5w:B 18 18 0.4737 0.5000 0.5000 -24
82 7n94:G 18 18 0.4737 0.5000 0.5000 -24
83 7pu7:P 14 14 0.6316 0.8571 0.8571 -24
84 7xv6:D 18 18 0.4737 0.5000 0.5000 -24 7xv8:D
85 8bd6:C 18 18 0.4737 0.5000 0.5000 -24
86 8dfa:N 18 18 0.4737 0.5000 0.5000 -24
87 8eae:E 18 18 0.4737 0.5000 0.5000 -24 8eae:F, 8eae:I, 8eae:J, 8ecc:E, 8ecc:F, 8ecc:I, 8ecc:J, 8g10:E, 8g10:F, 8g10:I, 8g10:J, 8g1j:E, 8g1j:F, 8g1j:I, 8g1j:J, 8g23:E, 8g23:F, 8g23:I, 8g23:J, 8g2p:E, 8g2p:F, 8g2p:I, 8g2p:J, 8g2q:E, 8g2q:F, 8g2q:I, 8g2q:J, 8gim:E, 8gim:F, 8gim:I, 8gim:J, 8gin:E, 8gin:F, 8gin:I, 8gin:J, 8gio:E, 8gio:F, 8gio:I, 8gio:J, 8gip:E, 8gip:F, 8gip:I, 8gip:J, 8gir:E, 8gir:F, 8gir:I, 8gir:J, 8gis:E, 8gis:F, 8gis:I, 8gis:J, 8git:E, 8git:F, 8git:I, 8git:J, 4ley:E, 4ley:F, 4ley:G, 4ley:H, 4ley:I, 4ley:J, 4ley:K, 4ley:L, 4lez:E, 4lez:F, 4lez:I, 4lez:J, 8sj0:E, 8sj0:F, 8sj0:I, 8sj0:J, 8sj1:E, 8sj1:F, 8sj1:I, 8sj1:J, 8sj2:E, 8sj2:F, 8sj2:I, 8sj2:J, 8skt:E, 8skt:F, 8skt:I, 8skt:J, 7utt:E, 7utt:F, 7utt:I, 7utt:J, 7uux:E, 7uux:F, 7uux:I, 7uux:J, 7uxw:E, 7uxw:F, 7uxw:I, 7uxw:J, 7uyq:E, 7uyq:F, 7uyq:I, 7uyq:J, 7uyz:E, 7uyz:F, 7uyz:I, 7uyz:J, 7uzr:E, 7uzr:F, 7uzr:I, 7uzr:J, 7v0c:E, 7v0c:F, 7v0c:I, 7v0c:J, 7v0r:E, 7v0r:F, 7v0r:I, 7v0r:J, 7v0w:E, 7v0w:F, 7v0w:I, 7v0w:J
88 8g5i:P 18 18 0.4737 0.5000 0.5000 -24 8g5k:P, 8t7e:P
89 8hnv:C 18 18 0.4737 0.5000 0.5000 -24
90 8sva:B 18 18 0.4737 0.5000 0.5000 -24
91 9baq:H 18 18 0.4737 0.5000 0.5000 -24
92 1dct:N 17 17 0.4737 0.5294 0.5294 -25
93 1e3m:F 17 17 0.4737 0.5294 0.5294 -25 3k0s:F, 1ng9:F, 1w7a:F, 1wb9:F, 1wbb:F, 1wbd:F, 3zlj:F
94 1iaw:D 17 17 0.4737 0.5294 0.5294 -25 1iaw:E, 1iaw:F
95 1oh7:F 17 17 0.4737 0.5294 0.5294 -25
96 2gm4:J 17 17 0.4737 0.5294 0.5294 -25
97 4cn2:B 17 17 0.4737 0.5294 0.5294 -25
98 4cn3:F 17 17 0.4737 0.5294 0.5294 -25 4cn3:H
99 4gg4:G 17 17 0.4737 0.5294 0.5294 -25 4osi:G, 4osm:G, 4osm:I, 4ost:I, 4osv:G, 4osv:I, 4osw:G, 4osw:I, 4osz:G, 4osz:I, 4ot0:I, 4ot3:I, 4oto:G, 4oto:I, 3v6t:G, 3v6t:I
100 5uan:F 17 17 0.4737 0.5294 0.5294 -25
101 6ny1:D 17 17 0.4737 0.5294 0.5294 -25
102 8pk1:J 12 12 0.5263 0.8333 0.8333 -25
103 1c0w:F 21 19 0.5263 0.4762 0.5263 -26
104 1yfh:D 16 16 0.4737 0.5625 0.5625 -26 1yfh:F
105 3sq2:T 16 16 0.4737 0.5625 0.5625 -26 3sun:T, 3suq:T
106 4ati:C 16 16 0.4737 0.5625 0.5625 -26
107 4s2q:A 16 16 0.4737 0.5625 0.5625 -26
108 5d39:N 21 19 0.5263 0.4762 0.5263 -26 5d39:F
109 5ei9:B 21 19 0.5263 0.4762 0.5263 -26 5ei9:D
110 5wc9:D 21 19 0.5263 0.4762 0.5263 -26
111 6bqu:C 16 16 0.4737 0.5625 0.5625 -26 6bsf:C
112 6g1l:B 16 16 0.4737 0.5625 0.5625 -26
113 6l6y:A 16 16 0.4737 0.5625 0.5625 -26 6l6y:C
114 6wc2:E 21 19 0.5263 0.4762 0.5263 -26 6wc2:G, 6wc2:K, 6wc5:E
115 7eh2:H 17 17 0.5789 0.6471 0.6471 -26 7eh2:Q
116 7l4m:G 16 16 0.4737 0.5625 0.5625 -26
117 7txc:A 16 16 0.4737 0.5625 0.5625 -26
118 7vov:C 16 16 0.4737 0.5625 0.5625 -26 7vox:E, 7vox:G
119 8ekj:C 16 16 0.4737 0.5625 0.5625 -26
120 8eku:C 16 16 0.4737 0.5625 0.5625 -26
121 8eqg:C 16 16 0.4211 0.5000 0.5000 -26
122 8k21:V 21 19 0.5263 0.4762 0.5263 -26 8k22:V, 8k23:V, 8k24:V
123 8pi7:F 21 19 0.5263 0.4762 0.5263 -26
124 8pi9:F 21 19 0.5263 0.4762 0.5263 -26
125 8w8n:G 16 16 0.4737 0.5625 0.5625 -26
126 1a6y:D 20 19 0.4737 0.4500 0.4737 -27 1hlz:D
127 1b72:D 20 19 0.4737 0.4500 0.4737 -27
128 1d66:D 19 19 0.3158 0.3158 0.3158 -27
129 1dgc:B 19 19 0.3158 0.3158 0.3158 -27 2dgc:B
130 1ga5:D 20 19 0.4211 0.4000 0.4211 -27 1ga5:H
131 1ign:D 19 19 0.3158 0.3158 0.3158 -27 1ign:F
132 1jnm:C 20 19 0.4737 0.4500 0.4737 -27 1jnm:D
133 1nkp:F 19 19 0.3158 0.3158 0.3158 -27 1nkp:G, 1nkp:H, 1nkp:J
134 1p51:E 19 19 0.3158 0.3158 0.3158 -27 1p51:F, 1p51:I, 1p51:H
135 1r0a:P 20 19 0.4737 0.4500 0.4737 -27
136 1r4r:D 19 19 0.3158 0.3158 0.3158 -27
137 1tk8:T 20 19 0.4737 0.4500 0.4737 -27
138 1tro:I 19 19 0.3158 0.3158 0.3158 -27 1tro:J, 1tro:K, 1tro:L
139 1y77:T 19 19 0.3158 0.3158 0.3158 -27
140 2ezv:G 15 15 0.4737 0.6000 0.6000 -27
141 2h1k:C 15 15 0.4737 0.6000 0.6000 -27 2h1k:E
142 2han:C 20 19 0.4737 0.4500 0.4737 -27 4umm:C
143 2q2k:F 20 19 0.4211 0.4000 0.4211 -27
144 2wiz:C 20 19 0.4737 0.4500 0.4737 -27
145 3hoz:T 19 19 0.3158 0.3158 0.3158 -27
146 3i4n:T 20 19 0.4211 0.4000 0.4211 -27
147 3po2:T 19 19 0.3158 0.3158 0.3158 -27
148 3rkq:C 19 19 0.3158 0.3158 0.3158 -27
149 3rn5:L 19 19 0.3158 0.3158 0.3158 -27 3rn5:N
150 4a3f:T 20 19 0.4211 0.4000 0.4211 -27
151 4bac:C 19 19 0.3158 0.3158 0.3158 -27 3l2q:C, 3l2r:C, 3l2u:C, 3l2v:C, 3l2w:C
152 4bul:F 19 19 0.3158 0.3158 0.3158 -27
153 4bul:G 19 19 0.3158 0.3158 0.3158 -27
154 4gle:B 15 15 0.4737 0.6000 0.6000 -27
155 4h10:C 15 15 0.4737 0.6000 0.6000 -27
156 4hje:F 21 19 0.6316 0.5714 0.6316 -27 5lgy:F
157 4i8t:C 19 19 0.3158 0.3158 0.3158 -27
158 4j19:D 19 19 0.3158 0.3158 0.3158 -27 1w0t:D
159 4s0h:C 19 19 0.3158 0.3158 0.3158 -27 4s0h:G
160 4s0h:D 19 19 0.3158 0.3158 0.3158 -27 4s0h:H
161 4zcf:E 20 19 0.4737 0.4500 0.4737 -27
162 5ciz:D 20 19 0.4737 0.4500 0.4737 -27
163 5ean:B 15 15 0.4737 0.6000 0.6000 -27
164 5mg7:C 20 19 0.4737 0.4500 0.4737 -27
165 5nfv:D 25 19 0.6842 0.5200 0.6842 -27
166 5npk:e 20 19 0.4737 0.4500 0.4737 -27 5npk:f, 6qtk:E, 6qtk:F, 6qx1:E, 6qx1:F
167 5t9j:F 19 19 0.3158 0.3158 0.3158 -27
168 5trd:G 19 19 0.3158 0.3158 0.3158 -27
169 5vpf:E 19 19 0.3158 0.3158 0.3158 -27 5vpf:G
170 5vpf:F 19 19 0.3158 0.3158 0.3158 -27 5vpf:H
171 5y7q:C 19 19 0.3158 0.3158 0.3158 -27
172 5yej:F 19 19 0.3158 0.3158 0.3158 -27
173 5zfw:D 19 19 0.3158 0.3158 0.3158 -27
174 5zog:C 19 19 0.3158 0.3158 0.3158 -27
175 6emy:C 19 19 0.3158 0.3158 0.3158 -27
176 6j5b:B 20 19 0.4737 0.4500 0.4737 -27 6j5b:E, 6j5b:I
177 6lty:C 20 19 0.4737 0.4500 0.4737 -27
178 6ml4:E 20 19 0.4737 0.4500 0.4737 -27
179 6ml5:E 20 19 0.4737 0.4500 0.4737 -27 6ml6:E, 6ml7:E
180 6ovr:G 19 19 0.3158 0.3158 0.3158 -27
181 6ow3:H 19 19 0.3158 0.3158 0.3158 -27
182 6oy6:G 19 19 0.3158 0.3158 0.3158 -27 6oy7:G, 5vo8:G
183 6ozh:E 19 19 0.3158 0.3158 0.3158 -27 6ozh:F
184 6yl2:H 20 19 0.4737 0.4500 0.4737 -27
185 7b4a:C 20 19 0.4737 0.4500 0.4737 -27 3kz8:C, 5mct:C, 5mcu:C
186 7bca:C 19 19 0.3158 0.3158 0.3158 -27
187 7fj2:C 20 19 0.4737 0.4500 0.4737 -27 7fj2:D, 7fj2:G, 7fj2:H, 6lbi:A, 6lbi:B, 6lbi:E, 6lbi:F, 6lbi:I, 6lbi:J
188 7wju:D 19 19 0.3158 0.3158 0.3158 -27
189 7zpp:R 19 19 0.3158 0.3158 0.3158 -27 7zpp:T
190 8b4c:M 20 19 0.4737 0.4500 0.4737 -27
191 8dr1:I 19 19 0.3158 0.3158 0.3158 -27 8dr3:I, 8dr4:I
192 8efc:F 19 19 0.3158 0.3158 0.3158 -27
193 8f3c:A 19 19 0.3158 0.3158 0.3158 -27 8g00:A, 8g2w:A, 8g4w:A, 8g7e:A
194 8fix:N 15 15 0.4737 0.6000 0.6000 -27
195 8jkl:B 19 19 0.3158 0.3158 0.3158 -27 8jkl:F, 8jko:B, 8jko:F
196 8jr8:F 20 19 0.4737 0.4500 0.4737 -27 8jr8:H, 8qlp:D, 8qlp:H, 8qlp:L, 8qlp:P
197 8olx:C 20 19 0.4737 0.4500 0.4737 -27
198 8sfq:D 19 19 0.3158 0.3158 0.3158 -27 8sfr:D
199 8ssu:B 19 19 0.3158 0.3158 0.3158 -27
200 8tlo:B 19 19 0.3158 0.3158 0.3158 -27
201 8tlo:C 19 19 0.3158 0.3158 0.3158 -27
202 8u8l:C 19 19 0.3158 0.3158 0.3158 -27
203 8vat:I 20 19 0.4737 0.4500 0.4737 -27
204 9bdu:D 19 19 0.3158 0.3158 0.3158 -27
205 9bdw:D 19 19 0.3158 0.3158 0.3158 -27
206 1lfu:B 14 14 0.4737 0.6429 0.6429 -28
207 1n6j:C 14 14 0.4737 0.6429 0.6429 -28
208 1skn:B 15 15 0.5789 0.7333 0.7333 -28
209 2f5n:B 14 14 0.4737 0.6429 0.6429 -28 3sar:C, 6tc9:B, 6tc9:F
210 4gcl:W 14 14 0.4737 0.6429 0.6429 -28 4gcl:Z, 4gcl:R, 4gcl:T
211 4xvi:P 14 14 0.4737 0.6429 0.6429 -28
212 5gnj:K 14 14 0.4737 0.6429 0.6429 -28 5gnj:C, 5gnj:H
213 6jcx:H 20 18 0.6316 0.6000 0.6667 -28 6jcy:H, 6koo:H
214 6ml4:F 20 18 0.6316 0.6000 0.6667 -28
215 6ml5:F 20 18 0.6316 0.6000 0.6667 -28 6ml6:F, 6ml7:F
216 6xlm:N 14 14 0.4737 0.6429 0.6429 -28 6xln:N
217 1b3t:C 18 18 0.4211 0.4444 0.4444 -29 1b3t:D
218 1e3m:E 18 18 0.4211 0.4444 0.4444 -29 3k0s:E, 1ng9:E, 1oh7:E, 1w7a:E, 1wb9:E, 1wbb:E, 1wbd:E
219 1hw2:E 18 18 0.4211 0.4444 0.4444 -29
220 1jey:C 18 18 0.4211 0.4444 0.4444 -29
221 1kb2:C 18 18 0.4211 0.4444 0.4444 -29
222 1kb2:D 18 18 0.4211 0.4444 0.4444 -29
223 1oh5:E 18 18 0.4211 0.4444 0.4444 -29
224 1rm1:E 18 18 0.4211 0.4444 0.4444 -29
225 2f8x:Y 18 18 0.4211 0.4444 0.4444 -29 3v79:Y
226 2ja7:2 18 18 0.4211 0.4444 0.4444 -29 2ja7:5
227 2wwy:T 18 18 0.4211 0.4444 0.4444 -29
228 3f2b:T 18 18 0.4211 0.4444 0.4444 -29 3f2c:T, 3f2d:T
229 3s2d:T 13 13 0.4737 0.6923 0.6923 -29
230 4a3e:T 18 18 0.3684 0.3889 0.3889 -29 4a3l:T
231 4rzr:E 18 18 0.4211 0.4444 0.4444 -29
232 5a39:E 13 13 0.4737 0.6923 0.6923 -29 5a39:F
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[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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