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BioLiP
>dna
agggcgcctataaaagggggtgggggcgcgttcgtcctcagtcgcgatcgaacactcgagccgagcagacgtgcctacgg

The query sequence (length=80) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fur:F 80 80 1.0000 1.0000 1.0000 1.58e-38 6mzm:U
2 5fur:E 80 80 1.0000 1.0000 1.0000 1.58e-38 6mzm:V
3 5iyc:Y 80 78 0.9750 0.9750 1.0000 2.05e-37 5iyd:Y
4 5iy8:Y 83 80 0.9875 0.9518 0.9875 7.36e-37 5iy9:Y
5 5iy7:Y 77 75 0.9375 0.9740 1.0000 9.52e-36
6 7egj:Y 74 74 0.9250 1.0000 1.0000 3.42e-35
7 7egj:X 74 74 0.9250 1.0000 1.0000 3.42e-35
8 5iyb:Y 75 73 0.9125 0.9733 1.0000 1.23e-34
9 7egd:Y 72 72 0.9000 1.0000 1.0000 4.43e-34
10 7egd:X 72 72 0.9000 1.0000 1.0000 4.43e-34
11 7eg9:Y 71 71 0.8875 1.0000 1.0000 1.59e-33
12 7eg9:X 71 71 0.8875 1.0000 1.0000 1.59e-33
13 7eg7:Y 71 70 0.8750 0.9859 1.0000 5.73e-33
14 7eg7:X 71 70 0.8750 0.9859 1.0000 5.73e-33
15 7egb:Y 69 68 0.8500 0.9855 1.0000 7.41e-32 7ena:Y, 7enc:Y
16 7egb:X 69 68 0.8500 0.9855 1.0000 7.41e-32 7ena:X, 7enc:X
17 5iy6:Y 65 63 0.7875 0.9692 1.0000 4.46e-29 6o9l:Y
18 5iy6:X 65 63 0.7875 0.9692 1.0000 4.46e-29 6o9l:X
19 7lbm:V 64 62 0.7750 0.9688 1.0000 1.60e-28
20 7lbm:U 64 62 0.7750 0.9688 1.0000 1.60e-28
21 5iya:Y 59 57 0.7125 0.9661 1.0000 9.65e-26
22 5iya:X 59 57 0.7125 0.9661 1.0000 9.65e-26
23 8gxq:Y 67 66 0.7750 0.9254 0.9394 1.62e-23 8gxs:Y
24 8gxq:X 67 66 0.7750 0.9254 0.9394 1.62e-23 8gxs:X
25 5iy7:X 77 75 0.8250 0.8571 0.8800 9.72e-21
26 5iyb:X 75 73 0.8000 0.8533 0.8767 1.26e-19
27 7egh:Y 45 45 0.5625 1.0000 1.0000 4.52e-19
28 7egh:X 45 45 0.5625 1.0000 1.0000 4.52e-19
29 5iy8:X 83 80 0.8250 0.7952 0.8250 3.52e-15 5iy9:X
30 5iyc:X 80 78 0.8000 0.8000 0.8205 4.55e-14 5iyd:X
31 7nvt:T 50 43 0.5000 0.8000 0.9302 5.89e-13
32 7nvt:N 50 40 0.4750 0.7600 0.9500 5.89e-13
33 7nvs:T 49 43 0.5000 0.8163 0.9302 5.89e-13
34 7nvs:N 49 40 0.4750 0.7755 0.9500 5.89e-13
35 7nvr:T 64 43 0.5000 0.6250 0.9302 5.89e-13 7nvy:T, 7nvz:T
36 7nvr:N 64 40 0.4750 0.5938 0.9500 5.89e-13 7nvy:N, 7nvz:N
37 8byq:T 198 43 0.5000 0.2020 0.9302 5.89e-13 8bz1:T
38 8byq:N 198 40 0.4750 0.1919 0.9500 5.89e-13 8bz1:N
39 8bvw:T 206 43 0.5000 0.1942 0.9302 5.89e-13
40 8bvw:N 206 40 0.4750 0.1845 0.9500 5.89e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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