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BioLiP
>dna
aggattgtgcaatata

The query sequence (length=16) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 7l4v:C 16 16 1.0000 1.0000 1.0000 32
2 6mg1:C 16 16 0.7500 0.7500 0.7500 12 6mg1:D, 6mg2:C, 6mg2:D, 6mg3:C, 6mg3:D
3 1gu5:D 16 16 0.6875 0.6875 0.6875 7
4 2e42:D 16 16 0.6250 0.6250 0.6250 2 2e43:D, 1gu4:D
5 2kdz:B 16 16 0.5625 0.5625 0.5625 -3 3zqc:B, 3zqc:E, 3zqc:H, 3zqc:K
6 6py8:A 16 16 0.5625 0.5625 0.5625 -3 6py8:X
7 7yzg:B 16 16 0.5625 0.5625 0.5625 -3
8 2e42:C 16 15 0.8750 0.8750 0.9333 -5 2e43:C, 1gu4:C
9 1gtw:C 16 16 0.5000 0.5000 0.5000 -8
10 2c6y:C 16 16 0.5000 0.5000 0.5000 -8
11 3co6:A 16 16 0.5000 0.5000 0.5000 -8
12 4a3j:T 16 16 0.4375 0.4375 0.4375 -8
13 4ati:D 16 16 0.5000 0.5000 0.5000 -8
14 4qtr:F 16 16 0.5000 0.5000 0.5000 -8 4qtr:H
15 5va7:C 16 16 0.5000 0.5000 0.5000 -8
16 6bqu:D 16 16 0.5000 0.5000 0.5000 -8 6bsf:D
17 6cr3:T 16 16 0.5000 0.5000 0.5000 -8 6cr4:T, 6cr5:T, 6cr6:T, 6cr7:T, 6cr8:T, 6cr9:T, 6crb:T, 6crc:T, 4phe:T, 4php:T, 3tfr:T, 3tfs:T, 1tva:T
18 6g1l:B 16 16 0.5000 0.5000 0.5000 -8
19 2cgp:C 15 15 0.6250 0.6667 0.6667 -10
20 8d2k:X 13 13 0.6250 0.7692 0.7692 -12 8d2l:X, 8d2o:X, 8d2q:X
21 1bpx:T 16 16 0.4375 0.4375 0.4375 -13 1bpy:T, 3c2m:T, 4f5n:T, 4f5p:T, 4f5q:T, 4f5r:T, 4f5r:F, 2fmp:T, 2i9g:T, 3isb:T, 4kld:T, 4kle:T, 4klf:T, 4klg:T, 4klh:T, 4kli:T, 4klj:T, 4kll:T, 4klm:T, 4klo:T, 4klq:T, 4kls:T, 4klt:T, 4klu:T, 4lvs:T, 1mq3:T, 4nm1:T, 4nm2:T, 4pgy:T, 6ph6:T, 4ppx:T, 7rbe:T, 7rbf:T, 7rbg:T, 7rbh:T, 7rbi:T, 7rbj:T, 7rbk:T, 7rbm:T, 7rbn:T, 7rbo:T, 3rjg:T, 3rjh:T, 3rjj:T, 3rjk:T, 4rpx:T, 4rpy:T, 4rpz:T, 4rq0:T, 4rq1:T, 4rq2:T, 4rq3:T, 4rq4:T, 4rq5:T, 4rq6:T, 4rq7:T, 4rq8:T, 5tb8:T, 5tb9:T, 5tba:T, 5tbb:T, 5tbc:T, 5u2r:T, 5u2s:T, 5u2t:T, 5u9h:T, 5ugn:T, 5ugo:T, 5ugp:T, 6w2m:T, 5wnz:T
22 1g4d:B 16 16 0.4375 0.4375 0.4375 -13
23 1g4d:C 16 16 0.4375 0.4375 0.4375 -13
24 2fvs:B 16 16 0.4375 0.4375 0.4375 -13
25 2kmk:C 16 16 0.4375 0.4375 0.4375 -13
26 2qnf:E 16 16 0.4375 0.4375 0.4375 -13
27 3coa:A 16 16 0.4375 0.4375 0.4375 -13 3coa:D
28 3igc:D 16 16 0.4375 0.4375 0.4375 -13
29 3oqn:B 16 16 0.4375 0.4375 0.4375 -13
30 3qsv:E 16 16 0.4375 0.4375 0.4375 -13 3qsv:F, 3qsv:G, 3qsv:H
31 3w6v:C 16 16 0.4375 0.4375 0.4375 -13
32 4a3i:T 17 16 0.6250 0.5882 0.6250 -13
33 4q5s:H 16 16 0.4375 0.4375 0.4375 -13
34 4xqq:E 16 16 0.4375 0.4375 0.4375 -13
35 4xr2:C 16 16 0.4375 0.4375 0.4375 -13
36 5bol:T 16 16 0.4375 0.4375 0.4375 -13 5bom:T, 5bpc:T, 3c2l:T, 6dia:T, 6dic:T, 4do9:T, 4doa:T, 4dob:T, 4doc:T, 2iso:T, 2isp:T, 3isc:T, 3isd:T, 3jpn:T, 3jpo:T, 3jpp:T, 3jpq:T, 3jpr:T, 3jps:T, 3jpt:T, 7k96:T, 7k97:T, 6n2r:T, 6n2s:T, 6n2t:T, 6nkr:T, 6nks:T, 6nkt:T, 2pxi:T, 4ub2:T, 4ub3:T, 4ub4:T, 4ub5:T, 4ubb:T, 4ubc:T, 6uok:B, 6uok:T, 6uol:T, 8vf8:T, 8vf9:T, 8vfa:T, 8vfb:T, 8vfc:T, 5wnx:T
37 5d4d:G 16 16 0.4375 0.4375 0.4375 -13 5d4d:R, 5d4e:G, 5d4e:R
38 5db7:T 16 16 0.4375 0.4375 0.4375 -13 5dba:T
39 5iud:E 16 16 0.4375 0.4375 0.4375 -13
40 5mhk:F 16 16 0.4375 0.4375 0.4375 -13
41 6ako:A 16 16 0.4375 0.4375 0.4375 -13 7cby:B, 3co7:B, 3co7:E, 5x07:E, 5x07:B, 5x07:H, 5x07:K
42 6bte:T 16 16 0.4375 0.4375 0.4375 -13 3c2k:T, 6cti:T, 6ctj:T, 6ctk:T, 6ctl:T, 6ctm:T, 6ctn:T, 6cto:T, 6ctp:T, 2fmq:B, 2fms:T, 6g2q:T, 3gdx:T, 5j0t:T, 5j0u:T, 5j2f:T, 5j2g:T, 5j2h:T, 4jwm:T, 4jwn:T, 3lk9:T, 4m9g:T, 4m9h:T, 4m9j:T, 4m9l:T, 4m9n:T, 3mby:T, 6mr7:T, 6mr8:T, 4o9m:B, 2p66:B, 4r63:T, 4r64:T, 4r65:T, 4r66:T, 4rt2:T, 4rt3:T, 1tv9:T, 5tzv:T, 5u8g:T, 5u8h:T, 5u8i:T, 4uaw:T, 4uay:T, 4uaz:T, 4ub1:T, 6uom:T, 5wny:T, 5wo0:T
43 7n5w:Y 16 16 0.4375 0.4375 0.4375 -13
44 7s9j:T 16 16 0.4375 0.4375 0.4375 -13 7s9k:T, 7s9l:T, 7s9m:T, 8vfj:T
45 7upz:C 16 16 0.4375 0.4375 0.4375 -13
46 7vou:A 16 16 0.4375 0.4375 0.4375 -13
47 7yzg:C 16 16 0.4375 0.4375 0.4375 -13
48 8ekz:C 16 16 0.4375 0.4375 0.4375 -13
49 1gtw:D 16 15 0.7500 0.7500 0.8000 -15
50 3sqi:C 15 15 0.5625 0.6000 0.6000 -15 3t79:C
51 4a3g:T 15 15 0.5625 0.6000 0.6000 -15
52 4e10:D 15 15 0.2500 0.2667 0.2667 -15
53 4s20:M 15 15 0.5625 0.6000 0.6000 -15 4s20:O
54 4xr0:C 15 15 0.5625 0.6000 0.6000 -15
55 5e5s:C 15 15 0.5625 0.6000 0.6000 -15 5e63:D, 4lox:D
56 7vov:D 15 15 0.5625 0.6000 0.6000 -15
57 7yz7:B 16 15 0.7500 0.7500 0.8000 -15
58 7yza:B 16 15 0.7500 0.7500 0.8000 -15
59 8ik5:B 15 15 0.5625 0.6000 0.6000 -15 8ike:B
60 8u3k:D 15 15 0.5625 0.6000 0.6000 -15
61 2v6e:D 19 16 0.6875 0.5789 0.6875 -16 2v6e:F
62 3gnb:E 14 14 0.5625 0.6429 0.6429 -16
63 4lt5:B 14 14 0.5625 0.6429 0.6429 -16
64 7lhz:I 14 14 0.5625 0.6429 0.6429 -16 6waa:J
65 7m2u:W 14 14 0.5625 0.6429 0.6429 -16
66 8fyc:I 14 14 0.5625 0.6429 0.6429 -16
67 7l4c:C 18 16 0.6250 0.5556 0.6250 -17
68 8t1u:G 18 16 0.6250 0.5556 0.6250 -17
69 1bpz:T 16 16 0.3750 0.3750 0.3750 -18 1zjm:T, 1zjn:T
70 1gu5:C 16 16 0.3750 0.3750 0.3750 -18
71 1p8k:C 16 16 0.3750 0.3750 0.3750 -18
72 1pue:A 16 16 0.3750 0.3750 0.3750 -18 1pue:C
73 2kdz:C 16 16 0.3750 0.3750 0.3750 -18 3zqc:C, 3zqc:F, 3zqc:I, 3zqc:L
74 2ql2:F 16 16 0.3750 0.3750 0.3750 -18 2ql2:H
75 2qnf:D 16 16 0.3750 0.3750 0.3750 -18
76 3bs1:C 16 16 0.3750 0.3750 0.3750 -18
77 3oqm:B 16 16 0.3750 0.3750 0.3750 -18
78 3oqm:E 16 16 0.3750 0.3750 0.3750 -18
79 3oqo:B 16 16 0.3750 0.3750 0.3750 -18 1rzr:H, 1rzr:E
80 3oqo:E 16 16 0.3750 0.3750 0.3750 -18 1rzr:R, 1rzr:B
81 3rh4:T 16 16 0.3750 0.3750 0.3750 -18 3rh5:T, 3rh6:T, 5v1f:T, 5v1g:T, 5v1i:T, 5v1j:T, 5v1p:T, 5v1r:T, 8vfg:T, 8vfh:T
82 4atk:C 16 16 0.3750 0.3750 0.3750 -18 4atk:D, 5eyo:B, 5eyo:D
83 4d1q:D 16 16 0.3750 0.3750 0.3750 -18 4d1q:F, 4d1q:J, 4d1q:L
84 4e0p:D 16 16 0.3750 0.3750 0.3750 -18 4e0y:D, 4e0z:D
85 4m6f:B 17 16 0.5625 0.5294 0.5625 -18
86 4q0w:C 16 16 0.3750 0.3750 0.3750 -18
87 4s2q:A 16 16 0.3750 0.3750 0.3750 -18
88 4s2q:B 16 16 0.3750 0.3750 0.3750 -18
89 4xr3:C 16 16 0.3750 0.3750 0.3750 -18
90 4xrs:L 16 16 0.3750 0.3750 0.3750 -18
91 4xyq:C 16 16 0.3750 0.3750 0.3750 -18
92 5c4a:S 16 16 0.3750 0.3750 0.3750 -18
93 5db8:T 16 16 0.3750 0.3750 0.3750 -18 5dbb:T
94 5db9:T 16 16 0.3750 0.3750 0.3750 -18 5dbc:T
95 5hhh:T 16 16 0.3750 0.3750 0.3750 -18 5hhi:T
96 5j0o:T 16 16 0.3750 0.3750 0.3750 -18 5j0p:T, 5j0q:T, 5j29:T, 5j2a:T, 5j2b:T
97 5j0r:T 16 16 0.3750 0.3750 0.3750 -18 5j0s:T, 5j2c:T, 5j2d:T, 5j2e:T
98 5jjv:D 17 16 0.5625 0.5294 0.5625 -18 5jjv:F
99 5krb:A 16 16 0.3750 0.3750 0.3750 -18
100 5m0r:U 16 16 0.3750 0.3750 0.3750 -18 5m0r:V
101 5ux0:F 16 16 0.3750 0.3750 0.3750 -18
102 5va0:C 16 16 0.3750 0.3750 0.3750 -18
103 5xou:E 16 16 0.3750 0.3750 0.3750 -18
104 6ako:B 16 16 0.3750 0.3750 0.3750 -18 7cby:A, 3co7:A, 3co7:D, 5x07:D, 5x07:A, 5x07:G, 5x07:J
105 6bel:T 16 16 0.3750 0.3750 0.3750 -18 6bem:T, 6cly:T, 6cpq:T, 6crh:T, 6ctq:T, 6ctr:T, 6ctt:T, 6ctu:T, 6ctv:T, 6ctw:T, 6ctx:T, 6cu9:T, 6cua:T, 6cub:T, 5db6:T, 5eoz:T, 4f5o:T, 4gxi:T, 4gxj:T, 4gxk:T, 4m2y:T, 4m47:T, 4mf2:T, 4mf8:T, 4mfa:T, 4mfc:T, 4mff:T, 1mq2:T, 4nlk:T, 4nln:T, 4nlz:T, 4nxz:T, 4ny8:T, 4o5c:T, 4o5e:T, 4o5k:T, 4p2h:T, 4pgq:T, 4pgx:T, 3rje:T, 3rjf:T, 3rji:T, 7s9n:T, 7s9o:T, 7s9p:T, 7s9q:T, 8vfd:T, 8vfe:T, 4ymm:T, 4ymn:T, 4ymo:T, 4yn4:T, 4z6c:T, 4z6d:T, 4z6e:T, 4z6f:T
106 6dww:B 16 16 0.3750 0.3750 0.3750 -18 6dwy:B, 6dx0:B
107 6e3r:T 16 16 0.3750 0.3750 0.3750 -18 6e3v:T, 6e3w:T, 6e3x:T, 5j0w:T, 5j0x:T, 5j0y:T, 5j2i:T, 5j2j:T, 5j2k:T, 7mz0:T, 7mz1:T, 7mz3:T, 7mz4:T, 4pha:T, 4phd:T, 6pkz:T
108 6fbe:C 16 16 0.3750 0.3750 0.3750 -18
109 6ish:D 16 16 0.3750 0.3750 0.3750 -18
110 6me0:B 16 16 0.3750 0.3750 0.3750 -18
111 6nku:T 16 16 0.3750 0.3750 0.3750 -18 6nkv:T, 6nkw:T, 6nkx:T, 6nky:T, 6nkz:T, 6nl0:T
112 6o0x:D 16 16 0.3750 0.3750 0.3750 -18 6o0y:D
113 6o8g:E 16 16 0.3750 0.3750 0.3750 -18 6o8g:I
114 6ovy:H 16 16 0.3750 0.3750 0.3750 -18
115 6ow3:G 16 16 0.3750 0.3750 0.3750 -18
116 6py8:D 16 16 0.3750 0.3750 0.3750 -18 6py8:Y
117 6ryl:G 16 16 0.3750 0.3750 0.3750 -18 6ryl:I
118 6wmi:C 17 16 0.5625 0.5294 0.5625 -18 6wmi:F
119 7mr3:A 16 16 0.3750 0.3750 0.3750 -18
120 7mz2:T 16 16 0.3750 0.3750 0.3750 -18 7mz8:T, 4ph5:T, 5v1h:T, 5v1n:T, 5v1o:T, 5vez:T, 8vff:T, 8vfi:T
121 7n5u:Y 16 16 0.3750 0.3750 0.3750 -18 7n5v:Y, 7n5v:I, 7n5v:E
122 7ol9:C 16 16 0.3750 0.3750 0.3750 -18 7ol9:D
123 7owf:C 16 16 0.3750 0.3750 0.3750 -18
124 7oyk:FFF 16 16 0.3750 0.3750 0.3750 -18 7oyk:KKK, 7oyk:HHH
125 7txc:A 16 16 0.3750 0.3750 0.3750 -18
126 7vou:B 16 16 0.3750 0.3750 0.3750 -18
127 7vov:C 16 16 0.3750 0.3750 0.3750 -18 7vox:E, 7vox:G
128 7vox:D 16 16 0.3750 0.3750 0.3750 -18 7vox:F
129 7y3k:G 16 16 0.3750 0.3750 0.3750 -18 7y3m:G, 7y3m:D, 7y3m:K
130 7yzc:B 16 16 0.3750 0.3750 0.3750 -18 7yzf:A
131 7yzd:B 16 16 0.3750 0.3750 0.3750 -18 7yze:B
132 8ac1:T 16 16 0.3750 0.3750 0.3750 -18 8acp:T
133 8e14:K 16 16 0.3750 0.3750 0.3750 -18 8e14:N
134 9cex:A 16 16 0.3750 0.3750 0.3750 -18 8oz6:J, 8oz6:L, 8oz6:O, 8oz6:P, 8ozd:J, 8ozd:E, 8ozf:J, 8ozf:L, 8ozf:P, 8ozf:Q, 8ozg:J, 8ozg:L, 8ozg:P, 8ozg:Q, 8ozi:J, 8ozi:L, 8ozi:O, 8ozi:P, 8qqu:F
135 4egy:U 21 16 0.7500 0.5714 0.7500 -19
136 1cf7:D 15 15 0.5000 0.5333 0.5333 -20
137 1nwq:D 21 16 0.8750 0.6667 0.8750 -20
138 2dtu:F 15 15 0.5000 0.5333 0.5333 -20 2dtu:H, 2dtu:J, 2dtu:L, 2p5g:F, 2p5g:H, 2p5g:J, 2p5o:F, 2p5o:H, 2p5o:J
139 2dy4:H 15 15 0.5000 0.5333 0.5333 -20 2dy4:J, 2dy4:L
140 2ief:D 15 15 0.5000 0.5333 0.5333 -20
141 2nbj:C 15 15 0.5000 0.5333 0.5333 -20
142 3brd:B 15 15 0.5000 0.5333 0.5333 -20 3brf:B, 3brg:B, 6dks:B, 6dks:F, 5e24:H, 5eg6:A, 2fo1:B, 4j2x:F, 4j2x:H, 1ttu:B
143 3iag:B 15 15 0.5000 0.5333 0.5333 -20
144 3kmp:C 15 15 0.5000 0.5333 0.5333 -20 5x6g:C
145 3rmd:H 15 15 0.5000 0.5333 0.5333 -20 3rmd:J, 3rmd:L
146 4k97:D 15 15 0.5000 0.5333 0.5333 -20 4k98:D, 4k99:D, 4k9a:D, 4k9b:D, 4o6a:D, 5xzb:E, 5xze:E, 5xzg:E
147 4rd5:D 15 15 0.5000 0.5333 0.5333 -20 4rd5:F
148 4rdm:D 15 15 0.5000 0.5333 0.5333 -20 4rdm:F
149 4xr1:C 15 15 0.5000 0.5333 0.5333 -20
150 6je4:D 15 15 0.5000 0.5333 0.5333 -20
151 6p1h:T 15 15 0.5000 0.5333 0.5333 -20
152 6p5a:D 15 15 0.5000 0.5333 0.5333 -20 6p5a:J
153 7kqm:C 15 15 0.5000 0.5333 0.5333 -20
154 7l4v:D 16 15 0.6875 0.6875 0.7333 -20
155 7o0h:E 15 15 0.5000 0.5333 0.5333 -20
156 7ysf:B 15 15 0.5000 0.5333 0.5333 -20
157 7yzb:B 16 15 0.6875 0.6875 0.7333 -20
158 7zie:X 20 16 0.6875 0.5500 0.6875 -20 7zie:Z
159 8asc:G 20 16 0.6875 0.5500 0.6875 -20 8asc:Q
160 8k8s:F 15 15 0.5000 0.5333 0.5333 -20 8k8u:F
161 8rdu:7 15 15 0.5000 0.5333 0.5333 -20 8rkv:7
162 9ezy:C 15 15 0.5000 0.5333 0.5333 -20
163 2jxi:D 14 14 0.5000 0.5714 0.5714 -21
164 3gna:E 14 14 0.5000 0.5714 0.5714 -21
165 4jbk:E 14 14 0.5000 0.5714 0.5714 -21 4jbk:F, 4jbk:G, 4jbk:H
166 4k97:E 14 14 0.5000 0.5714 0.5714 -21 4k98:E, 4k99:E, 4k9a:E, 4k9b:E, 4o6a:E, 5xzb:F, 5xze:F, 5xzg:F
167 4lt5:C 14 14 0.5000 0.5714 0.5714 -21
168 4mgt:B 14 14 0.5000 0.5714 0.5714 -21 3s5a:C
169 4yfu:F 14 14 0.5000 0.5714 0.5714 -21
170 5cg8:B 14 14 0.5000 0.5714 0.5714 -21
171 5vl9:F 14 14 0.5000 0.5714 0.5714 -21 5vl9:H
172 6crm:B 14 14 0.5000 0.5714 0.5714 -21
173 6dfy:E 14 14 0.5000 0.5714 0.5714 -21
174 7z9c:F 14 14 0.5000 0.5714 0.5714 -21 7z9g:F, 7z9k:F, 7z9m:F
175 8qa9:E 14 14 0.5000 0.5714 0.5714 -21 8qa9:F
176 2f8x:X 18 16 0.5625 0.5000 0.5625 -22 3v79:X
177 5e01:C 18 16 0.5625 0.5000 0.5625 -22 5e01:D
178 5nnx:F 18 16 0.5625 0.5000 0.5625 -22
179 5no6:F 18 16 0.5625 0.5000 0.5625 -22 5no6:E
180 6a5n:C 13 13 0.5000 0.6154 0.6154 -22
181 6ct9:B 13 13 0.5000 0.6154 0.6154 -22 6cta:B
182 6xeo:B 18 16 0.5625 0.5000 0.5625 -22
183 7wnr:A 18 16 0.5625 0.5000 0.5625 -22
184 8rev:E 18 16 0.5625 0.5000 0.5625 -22
185 8sva:D 18 16 0.5625 0.5000 0.5625 -22
186 1cez:T 17 16 0.5000 0.4706 0.5000 -23
187 1cit:B 16 16 0.3125 0.3125 0.3125 -23 7wnh:F, 7wnh:H, 7wnh:K, 7wnh:N
188 1drg:B 16 16 0.3125 0.3125 0.3125 -23 1f44:M
189 1efa:D 17 16 0.5000 0.4706 0.5000 -23 2pe5:D
190 1efa:E 17 16 0.5000 0.4706 0.5000 -23 2pe5:E, 2pe5:F
191 1lq1:E 16 16 0.3125 0.3125 0.3125 -23 1lq1:G
192 1lq1:F 16 16 0.3125 0.3125 0.3125 -23 1lq1:H
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997 1vol:C 16 16 0.1875 0.1875 0.1875 -33
998 1vol:D 16 16 0.1875 0.1875 0.1875 -33
999 1yfh:E 16 16 0.1875 0.1875 0.1875 -33 1yfh:G
1000 1yfl:F 16 16 0.1875 0.1875 0.1875 -33 1yfl:G, 1yfl:H, 1yfl:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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