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BioLiP
>dna
actacttgacccucctcat

The query sequence (length=19) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		Alignment
score 		Homologs
to hit
1 5ot2:T 19 19 1.0000 1.0000 1.0000 38
2 2r7z:T 17 17 0.7895 0.8824 0.8824 10
3 1y1w:T 19 19 0.6316 0.6316 0.6316 8
4 8txo:T 19 19 0.5789 0.5789 0.5789 3
5 1y77:T 19 19 0.5263 0.5263 0.5263 -2
6 9bdw:D 19 19 0.5263 0.5263 0.5263 -2
7 2ja7:2 18 18 0.6842 0.7222 0.7222 -4 2ja7:5
8 9baq:H 18 18 0.6316 0.6667 0.6667 -4
9 6rj9:E 19 19 0.5263 0.5263 0.5263 -7 6rja:E, 6rja:H
10 8w09:E 19 19 0.4737 0.4737 0.4737 -7 8w09:N, 8w34:E, 8w34:N
11 9bdu:D 19 19 0.4737 0.4737 0.4737 -7
12 8jpx:U 17 17 0.6316 0.7059 0.7059 -10 8jpx:T
13 1c0w:E 21 19 0.6316 0.5714 0.6316 -11
14 2ja6:T 19 19 0.4737 0.4737 0.4737 -12
15 5edw:T 19 19 0.4211 0.4211 0.4211 -12
16 9c9m:E 19 19 0.4211 0.4211 0.4211 -12 9c9m:N, 8fn7:E, 8fn7:K, 8fnd:E, 8fnd:K, 8fng:E, 8fng:K, 8fnh:E, 8fnh:K, 8fnj:E, 8fnj:K, 8fnl:E, 8fnl:K, 8fnm:E, 8fnm:K, 8fnn:E, 8fnn:K, 8fno:E, 8fno:K, 8fnp:E, 8fnp:K, 8fnq:E, 8fnq:K, 6puw:E, 6puy:E, 6puz:E, 6v3k:E, 8w2r:E, 8w2r:N
17 2wwy:T 18 18 0.5263 0.5556 0.5556 -14
18 3hou:1 18 18 0.5789 0.6111 0.6111 -14 3hou:4
19 1c0w:F 21 19 0.5789 0.5238 0.5789 -16
20 2nvt:T 21 19 0.5789 0.5238 0.5789 -16
21 6h67:T 21 19 0.5789 0.5238 0.5789 -16
22 7ouf:I 21 19 0.5789 0.5238 0.5789 -16 7ouf:K, 7oug:I, 7oug:K, 7ouh:I, 7ouh:K, 7pel:K, 7pel:M
23 7r6r:C 21 19 0.6316 0.5714 0.6316 -16 7tz1:C
24 2asd:J 19 19 0.3684 0.3684 0.3684 -17 2atl:J, 3gii:E, 3khg:E, 3rb0:E, 3rb3:E
25 2ja8:T 19 19 0.4211 0.4211 0.4211 -17
26 2rgr:D 19 19 0.3684 0.3684 0.3684 -17
27 2wty:D 19 19 0.4211 0.4211 0.4211 -17
28 2wwy:Q 20 19 0.5263 0.5000 0.5263 -17
29 3foe:F 19 19 0.4211 0.4211 0.4211 -17 3fof:F
30 3rb4:E 19 19 0.3684 0.3684 0.3684 -17 3rb6:E, 3rbd:E, 3rbe:E
31 3rkq:D 19 19 0.4211 0.4211 0.4211 -17
32 4a3k:T 19 19 0.3158 0.3158 0.3158 -17
33 4bul:F 19 19 0.4211 0.4211 0.4211 -17
34 4eot:D 19 19 0.4211 0.4211 0.4211 -17
35 5vpf:E 19 19 0.4211 0.4211 0.4211 -17 5vpf:G
36 5yej:D 19 19 0.3684 0.3684 0.3684 -17 5yej:G
37 6fm4:E 19 19 0.3684 0.3684 0.3684 -17
38 6fqm:F 20 19 0.5263 0.5000 0.5263 -17 6fqm:f, 6fqs:E, 6fqs:F
39 6ovr:G 19 19 0.4211 0.4211 0.4211 -17
40 6oy6:G 19 19 0.4211 0.4211 0.4211 -17 6oy7:G, 5vo8:G
41 6qx2:v 19 19 0.3684 0.3684 0.3684 -17
42 7f4y:S 19 19 0.3684 0.3684 0.3684 -17
43 7kle:T 19 19 0.3684 0.3684 0.3684 -17 7klf:T
44 8br2:H 20 19 0.5789 0.5500 0.5789 -17
45 8om9:D 20 19 0.5789 0.5500 0.5789 -17
46 9bdu:C 19 19 0.4211 0.4211 0.4211 -17
47 9ezy:E 19 19 0.3684 0.3684 0.3684 -17
48 2c9l:B 18 18 0.5263 0.5556 0.5556 -19
49 5mey:D 18 18 0.5263 0.5556 0.5556 -19 5nm9:C
50 6lb3:J 18 18 0.4737 0.5000 0.5000 -19 6lb3:L
51 6put:E 18 18 0.4737 0.5000 0.5000 -19
52 7l4m:D 18 18 0.4737 0.5000 0.5000 -19
53 9bdv:D 18 18 0.4737 0.5000 0.5000 -19
54 9ja1:T 23 19 0.7368 0.6087 0.7368 -20
55 3bs1:C 16 16 0.4211 0.5000 0.5000 -21
56 4hri:C 21 19 0.5789 0.5238 0.5789 -21 4yrv:C
57 4omy:F 21 19 0.5263 0.4762 0.5263 -21 4omy:H
58 4xyq:C 16 16 0.4737 0.5625 0.5625 -21
59 6uin:W 21 19 0.5789 0.5238 0.5789 -21
60 7x5e:C 16 16 0.4737 0.5625 0.5625 -21 7x5e:G
61 8sy6:T 21 19 0.5263 0.4762 0.5263 -21
62 1svc:D 19 19 0.3684 0.3684 0.3684 -22
63 1tc3:B 20 19 0.5263 0.5000 0.5263 -22
64 2c9l:A 19 19 0.3684 0.3684 0.3684 -22
65 2geq:C 15 15 0.4737 0.6000 0.6000 -22
66 2h7h:X 19 19 0.3684 0.3684 0.3684 -22
67 2rbf:C 19 19 0.3158 0.3158 0.3158 -22
68 2wty:C 20 19 0.5263 0.5000 0.5263 -22
69 3coq:D 20 19 0.4737 0.4500 0.4737 -22
70 3k5m:T 20 19 0.4737 0.4500 0.4737 -22
71 3rn5:L 19 19 0.3158 0.3158 0.3158 -22 3rn5:N
72 4f6m:E 19 19 0.3684 0.3684 0.3684 -22 2lt7:E
73 5hod:B 20 19 0.4737 0.4500 0.4737 -22
74 5iwm:F 20 19 0.4737 0.4500 0.4737 -22
75 5j2n:P 19 19 0.3684 0.3684 0.3684 -22
76 5mhk:G 19 19 0.3684 0.3684 0.3684 -22
77 5t9j:E 19 19 0.3158 0.3158 0.3158 -22
78 5trd:G 19 19 0.3684 0.3684 0.3684 -22
79 5trd:H 19 19 0.3158 0.3158 0.3158 -22
80 5vpf:F 19 19 0.3684 0.3684 0.3684 -22 5vpf:H
81 7taw:X 19 19 0.3684 0.3684 0.3684 -22 7tax:X
82 7taw:Y 19 19 0.3684 0.3684 0.3684 -22 7tax:Y
83 8efc:F 19 19 0.3684 0.3684 0.3684 -22
84 8ekz:D 16 15 0.6316 0.7500 0.8000 -22
85 8spq:E 19 19 0.3684 0.3684 0.3684 -22 8sqh:c, 8srs:c
86 9bdw:C 19 19 0.3684 0.3684 0.3684 -22
87 1r9s:T 14 14 0.4737 0.6429 0.6429 -23 1sfo:T
88 4pxi:E 20 18 0.6842 0.6500 0.7222 -23
89 7n3p:C 20 18 0.6316 0.6000 0.6667 -23
90 1h0m:E 18 18 0.4211 0.4444 0.4444 -24 1h0m:F, 1h0m:G, 1h0m:H
91 1hw2:E 18 18 0.4737 0.5000 0.5000 -24
92 1rys:D 18 18 0.4211 0.4444 0.4444 -24 1rys:F
93 2jej:T 18 18 0.4211 0.4444 0.4444 -24
94 2r8g:T 18 18 0.4211 0.4444 0.4444 -24
95 2r8h:T 18 18 0.4211 0.4444 0.4444 -24 4tqr:T, 2xcp:F, 2xcp:T
96 3g6p:C 18 18 0.4211 0.4444 0.4444 -24 3g6r:D
97 3gij:E 18 18 0.4211 0.4444 0.4444 -24 3gik:E, 3gil:E, 3gim:E, 3khl:J, 3khr:J
98 3m9o:T 18 18 0.4211 0.4444 0.4444 -24
99 3pt6:C 19 18 0.5789 0.5789 0.6111 -24 3pt6:D, 3pta:B
100 4m6f:C 18 18 0.4737 0.5000 0.5000 -24
101 5hri:C 18 18 0.4211 0.4444 0.4444 -24 5hri:F
102 5t01:C 18 18 0.4737 0.5000 0.5000 -24
103 5ua1:C 18 18 0.4211 0.4444 0.4444 -24 5ua1:E
104 5ua1:D 18 18 0.4211 0.4444 0.4444 -24 5ua1:F
105 6is7:D 18 18 0.4211 0.4444 0.4444 -24 6is7:F
106 6lb3:I 18 18 0.4211 0.4444 0.4444 -24 6lb3:K
107 6rks:G 18 18 0.4211 0.4444 0.4444 -24 6rks:H, 6rku:G, 6rku:H, 6rkv:G, 6rkv:H
108 7eyi:C 18 18 0.4211 0.4444 0.4444 -24
109 7l4c:C 18 18 0.4211 0.4444 0.4444 -24
110 7l4f:D 18 18 0.4211 0.4444 0.4444 -24
111 7xg2:J 18 18 0.4211 0.4444 0.4444 -24
112 8spo:D 18 18 0.4737 0.5000 0.5000 -24
113 8xbw:I 18 18 0.4737 0.5000 0.5000 -24
114 1jh9:B 17 17 0.4211 0.4706 0.4706 -25 1pnr:B, 1wet:B
115 1nvp:F 17 17 0.4737 0.5294 0.5294 -25
116 1tk8:P 17 17 0.4737 0.5294 0.5294 -25
117 2asd:E 17 17 0.4211 0.4706 0.4706 -25 2asl:E, 2asl:J, 2atl:E, 3khh:J, 3raq:J, 3rax:J
118 2i9t:C 17 17 0.4211 0.4706 0.4706 -25
119 2ypf:B 22 19 0.5263 0.4545 0.5263 -25
120 4a93:N 12 12 0.5263 0.8333 0.8333 -25
121 4gjr:I 17 17 0.4211 0.4706 0.4706 -25 4gjr:G
122 4j1j:H 17 17 0.4737 0.5294 0.5294 -25 4j1j:I
123 4u7d:P 17 17 0.4211 0.4706 0.4706 -25
124 4xrs:D 17 17 0.4211 0.4706 0.4706 -25
125 4y60:B 17 17 0.4211 0.4706 0.4706 -25
126 5d8l:C 17 17 0.4211 0.4706 0.4706 -25 5d8l:E
127 6ubf:W 22 19 0.5789 0.5000 0.5789 -25
128 7u32:X 17 17 0.4737 0.5294 0.5294 -25 7u32:Y
129 8e3d:Y 22 19 0.5789 0.5000 0.5789 -25 8e3d:E, 8e3d:I
130 8oma:D 17 17 0.4211 0.4706 0.4706 -25
131 8p5q:C 17 17 0.4211 0.4706 0.4706 -25
132 8t7s:D 17 17 0.4737 0.5294 0.5294 -25
133 9bdx:C 17 17 0.4211 0.4706 0.4706 -25
134 9bdx:D 17 17 0.4211 0.4706 0.4706 -25
135 1awc:E 21 19 0.4211 0.3810 0.4211 -26
136 1gtw:D 16 16 0.4737 0.5625 0.5625 -26
137 1ksy:F 21 19 0.5263 0.4762 0.5263 -26
138 1s0m:D 16 16 0.4211 0.5000 0.5000 -26 1s0m:F
139 1tsr:E 21 19 0.5263 0.4762 0.5263 -26 1tup:E
140 2e42:D 16 16 0.4211 0.5000 0.5000 -26 2e43:D, 1gu4:D
141 3jtg:C 16 16 0.4211 0.5000 0.5000 -26
142 3klh:F 21 19 0.5263 0.4762 0.5263 -26
143 4a0a:D 16 16 0.4211 0.5000 0.5000 -26
144 4atk:C 16 16 0.4211 0.5000 0.5000 -26 4atk:D, 5eyo:B, 5eyo:D
145 4cgz:C 17 17 0.5263 0.5882 0.5882 -26
146 4on0:F 21 19 0.4737 0.4286 0.4737 -26 4on0:H
147 5gpc:G 21 19 0.4737 0.4286 0.4737 -26
148 5h3r:C 21 19 0.5263 0.4762 0.5263 -26
149 5m0r:Q 21 19 0.4737 0.4286 0.4737 -26 5m0r:S, 7z1z:X, 7z1z:Y, 7zpp:Q, 7zpp:S
150 5vrw:T 16 16 0.4737 0.5625 0.5625 -26 5vrx:T, 5vry:T, 5vrz:T, 5vs0:T, 5vs1:T, 5vs2:T, 5vs3:T, 5vs4:T
151 6bse:D 16 16 0.4211 0.5000 0.5000 -26
152 7l4m:G 16 16 0.4737 0.5625 0.5625 -26
153 7o56:E 21 19 0.4737 0.4286 0.4737 -26
154 8e3e:Y 21 19 0.5263 0.4762 0.5263 -26 8e3e:E, 8e3e:I
155 8pi8:E 21 19 0.4737 0.4286 0.4737 -26
156 8pi9:E 21 19 0.4737 0.4286 0.4737 -26
157 8pia:E 21 19 0.4737 0.4286 0.4737 -26
158 8r0s:D 16 16 0.4211 0.5000 0.5000 -26
159 1b72:D 20 19 0.4211 0.4000 0.4211 -27
160 1crx:D 19 19 0.3158 0.3158 0.3158 -27 1crx:F, 1drg:C, 1f44:N
161 1flo:J 19 19 0.3158 0.3158 0.3158 -27 1flo:L, 1m6x:I
162 1fok:C 20 19 0.4211 0.4000 0.4211 -27
163 1fos:B 20 19 0.4211 0.4000 0.4211 -27 1fos:D
164 1hw2:D 20 19 0.4737 0.4500 0.4737 -27
165 1ign:C 19 19 0.3158 0.3158 0.3158 -27
166 1n5y:P 20 19 0.4737 0.4500 0.4737 -27 3v4i:P, 3v4i:F, 3v6d:P, 3v6d:F, 3v81:P, 3v81:F
167 1o4x:C 19 19 0.3158 0.3158 0.3158 -27
168 1p51:E 19 19 0.3158 0.3158 0.3158 -27 1p51:F, 1p51:I, 1p51:H
169 1puf:D 20 19 0.4737 0.4500 0.4737 -27
170 1r4r:D 19 19 0.2632 0.2632 0.2632 -27
171 1rpe:A 20 19 0.4737 0.4500 0.4737 -27
172 1srs:W 19 19 0.2632 0.2632 0.2632 -27
173 1tro:I 19 19 0.3158 0.3158 0.3158 -27 1tro:J, 1tro:K, 1tro:L
174 1ysa:A 20 19 0.4211 0.4000 0.4211 -27
175 2ajq:P 20 19 0.4737 0.4500 0.4737 -27
176 2h7h:Y 19 19 0.3158 0.3158 0.3158 -27
177 2hap:A 20 19 0.4211 0.4000 0.4211 -27 1qp9:E, 1qp9:G
178 3bdn:D 19 19 0.3158 0.3158 0.3158 -27 7jvt:F
179 3coq:E 20 19 0.4211 0.4000 0.4211 -27
180 3dfv:Z 20 19 0.4211 0.4000 0.4211 -27
181 3e0d:D 19 19 0.3158 0.3158 0.3158 -27 3e0d:F
182 3iag:A 15 15 0.4737 0.6000 0.6000 -27
183 3po2:T 19 19 0.2632 0.2632 0.2632 -27
184 3rkq:C 19 19 0.3158 0.3158 0.3158 -27
185 4bul:E 20 19 0.4211 0.4000 0.4211 -27
186 4i3h:G 20 19 0.4211 0.4000 0.4211 -27
187 4rkh:B 15 15 0.4737 0.6000 0.6000 -27
188 4yex:B 15 15 0.4737 0.6000 0.6000 -27 4yey:B
189 4zcf:E 20 19 0.4211 0.4000 0.4211 -27
190 5cdq:E 20 19 0.4211 0.4000 0.4211 -27 5cdq:F, 5cdq:V, 5cdq:W
191 5h9e:M 19 19 0.3158 0.3158 0.3158 -27
192 5ivw:X 19 19 0.3158 0.3158 0.3158 -27 1z63:C, 1z63:E
193 5ivw:Y 20 19 0.4211 0.4000 0.4211 -27 1z63:D, 1z63:F
194 5t01:D 19 19 0.3158 0.3158 0.3158 -27
195 5y7q:C 19 19 0.3158 0.3158 0.3158 -27
196 5yej:F 19 19 0.2632 0.2632 0.2632 -27
197 6c31:I 20 19 0.4737 0.4500 0.4737 -27 6c31:K
198 6kks:B 19 19 0.3158 0.3158 0.3158 -27
199 6oy5:G 19 19 0.3158 0.3158 0.3158 -27
200 6wya:C 20 19 0.4211 0.4000 0.4211 -27
201 6yl2:G 20 19 0.4211 0.4000 0.4211 -27
202 6yww:C 20 19 0.4211 0.4000 0.4211 -27
203 7dv2:E 20 19 0.4211 0.4000 0.4211 -27
204 7fvs:C 20 19 0.4211 0.4000 0.4211 -27 7fvs:D, 7fvt:C, 7fvt:D, 7mvs:C, 7mvs:D, 4plb:E, 2xcr:E, 2xcr:F, 2xcr:V, 2xcs:E
205 7n5t:Y 15 15 0.4211 0.5333 0.5333 -27
206 8g5j:P 19 19 0.3158 0.3158 0.3158 -27
207 8i87:E 19 19 0.2632 0.2632 0.2632 -27
208 8j7s:D 20 19 0.4737 0.4500 0.4737 -27
209 8jfr:E 19 19 0.3158 0.3158 0.3158 -27 8jfr:G, 8jfu:E, 8jfu:G
210 8jfr:F 19 19 0.3158 0.3158 0.3158 -27 8jfr:H, 8jfu:F, 8jfu:H
211 8jr8:F 20 19 0.4737 0.4500 0.4737 -27 8jr8:H, 8qlp:D, 8qlp:H, 8qlp:L, 8qlp:P
212 8ppu:P 19 19 0.2632 0.2632 0.2632 -27 8ppv:P
213 8sfq:D 19 19 0.2632 0.2632 0.2632 -27 8sfr:D
214 8srs:D 19 19 0.3158 0.3158 0.3158 -27
215 8ssu:B 19 19 0.2632 0.2632 0.2632 -27
216 8tll:C 19 19 0.3158 0.3158 0.3158 -27
217 8tpk:R 20 19 0.4737 0.4500 0.4737 -27
218 8v5r:P 20 19 0.3684 0.3500 0.3684 -27
219 8yrs:Q 19 19 0.3158 0.3158 0.3158 -27
220 9ezy:D 19 19 0.2632 0.2632 0.2632 -27
221 2rdj:C 14 14 0.4211 0.5714 0.5714 -28 2rdj:E
222 5u1c:E 14 14 0.4211 0.5714 0.5714 -28 5u1c:I
223 7pks:N 24 19 0.5789 0.4583 0.5789 -28
224 7pu7:P 14 14 0.4211 0.5714 0.5714 -28
225 8k4l:C 14 14 0.4211 0.5714 0.5714 -28 8k4l:D
226 1bf5:B 18 18 0.3684 0.3889 0.3889 -29
227 1dct:F 18 18 0.4211 0.4444 0.4444 -29
228 1h38:H 18 18 0.3684 0.3889 0.3889 -29
229 1q9x:E 18 18 0.3684 0.3889 0.3889 -29 1q9x:F, 1q9x:G, 1q9x:H
230 1q9y:T 18 18 0.3684 0.3889 0.3889 -29
231 1ynw:C 18 18 0.4211 0.4444 0.4444 -29
232 1zgw:B 18 18 0.4211 0.4444 0.4444 -29
233 2f8x:Y 18 18 0.4211 0.4444 0.4444 -29 3v79:Y
234 2r8i:T 18 18 0.3684 0.3889 0.3889 -29
235 2v9w:D 18 18 0.3684 0.3889 0.3889 -29 2va2:F
236 3cfp:T 18 18 0.3684 0.3889 0.3889 -29 3cq8:T, 1ig9:T, 6isf:D, 6isf:F, 4khq:T, 4khs:T, 4khu:T, 4khw:T, 4ki4:T, 4ki6:T
237 3cfr:T 18 18 0.3684 0.3889 0.3889 -29 3nae:T, 3s9h:T, 3scx:T, 3si6:T, 3sjj:T, 3sq0:T
238 3f2b:T 18 18 0.4211 0.4444 0.4444 -29 3f2c:T, 3f2d:T
239 3how:1 19 18 0.5789 0.5789 0.6111 -29
240 3hoy:T 19 17 0.6316 0.6316 0.7059 -29
241 3hoz:T 19 18 0.5789 0.5789 0.6111 -29
242 3kk3:P 18 18 0.4211 0.4444 0.4444 -29
243 3ksb:E 18 18 0.3684 0.3889 0.3889 -29
244 3qoq:E 18 18 0.4211 0.4444 0.4444 -29
245 3raq:E 18 18 0.3684 0.3889 0.3889 -29 3rax:E
246 3u3w:Y 18 18 0.3684 0.3889 0.3889 -29
247 4a3e:T 18 18 0.3158 0.3333 0.3333 -29 4a3l:T
248 4aa6:C 18 18 0.3684 0.3889 0.3889 -29 4aa6:G
249 4dtm:T 18 18 0.3684 0.3889 0.3889 -29
250 4fj7:T 18 18 0.3684 0.3889 0.3889 -29 4j2e:T
251 4j2a:T 18 18 0.3684 0.3889 0.3889 -29 4j2d:T, 3spy:T, 3sq1:T, 3uiq:T
252 4khy:T 18 18 0.3158 0.3333 0.3333 -29
253 4ond:J 18 18 0.3684 0.3889 0.3889 -29 4ond:L
254 4ri8:G 19 18 0.5263 0.5263 0.5556 -29 4ri8:J
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576 4f4z:T 13 13 0.3684 0.5385 0.5385 -34
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989 7q5b:t 19 19 0.2105 0.2105 0.2105 -37 7q5b:u
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991 7rpo:X 20 19 0.3684 0.3500 0.3684 -37 7rpw:X
992 7rte:A 15 15 0.3684 0.4667 0.4667 -37 7rti:A, 6wqu:A
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994 7z4h:D 19 19 0.2105 0.2105 0.2105 -37
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999 8e66:C 15 15 0.3684 0.4667 0.4667 -37 8e66:E
1000 8e67:C 15 15 0.3684 0.4667 0.4667 -37 8e67:E, 8e67:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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