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BioLiP
>dna
acgacagataatttgtcactgtacactacgccttttgtggagatgtctaatatctacgttttaacagtggccttattaaa
tgacttctcaaccttcac

The query sequence (length=98) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8rdu:3 98 98 1.0000 1.0000 1.0000 1.85e-48
2 8rkv:3 46 46 0.4694 1.0000 1.0000 1.49e-19
3 8aa5:L 44 43 0.4388 0.9773 1.0000 6.95e-18
4 8ff5:N 53 40 0.3980 0.7358 0.9750 5.41e-14
5 8ff4:N 85 40 0.3980 0.4588 0.9750 5.41e-14
6 8fcu:N 63 40 0.3980 0.6190 0.9750 5.41e-14
7 8bd5:C 41 35 0.3571 0.8537 1.0000 1.95e-13
8 8rkt:3 32 32 0.3265 1.0000 1.0000 9.06e-12
9 8yha:T 47 31 0.3163 0.6596 1.0000 3.26e-11
10 8fcj:N 38 28 0.2857 0.7368 1.0000 1.52e-09
11 8ea4:1 98 28 0.2857 0.2857 1.0000 1.52e-09
12 8ea3:1 99 28 0.2857 0.2828 1.0000 1.52e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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