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BioLiP
>dna
acccggacctgtgacaaattgccctcagacgg

The query sequence (length=32) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d86:A 32 32 1.0000 1.0000 1.0000 2.23e-12 8tip:A, 8tir:A, 8tiv:A, 8tix:A, 8tj0:A, 7u6k:A, 7uxy:A
2 8tit:A 31 31 0.9688 1.0000 1.0000 8.03e-12 8tiz:A
3 8tiq:B 32 31 0.9688 0.9688 1.0000 8.03e-12 8tiw:B
4 8tip:B 32 31 0.9688 0.9688 1.0000 8.03e-12 8tiv:B
5 8d8m:A 32 31 0.9688 0.9688 1.0000 8.03e-12 8tiq:A, 8tis:A, 8tiu:A, 8tiw:A, 8tiy:A, 8tj1:A
6 8tir:B 32 30 0.9375 0.9375 1.0000 2.89e-11 8tix:B, 7uxy:B
7 8d8m:B 32 30 0.9375 0.9375 1.0000 2.89e-11 8tis:B, 8tiy:B
8 8tiu:B 32 29 0.9062 0.9062 1.0000 1.04e-10 8tj1:B
9 8tit:B 31 29 0.9062 0.9355 1.0000 1.04e-10 8tiz:B
10 8d86:B 32 29 0.9062 0.9062 1.0000 1.04e-10 8tj0:B, 7u6k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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