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BioLiP Library
>dna
aagggcgcctataaaagggggtggttgtgatctacttcgagccgagcagacgtgcctacggac

The query sequence (length=63) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8war:X 63 63 1.0000 1.0000 1.0000 3.29e-29
2 8was:X 63 63 0.9841 0.9841 0.9841 5.51e-27
3 8waq:X 63 63 0.9841 0.9841 0.9841 5.51e-27
4 8wap:X 63 63 0.9683 0.9683 0.9683 2.56e-25
5 8wao:X 63 63 0.9524 0.9524 0.9524 4.29e-23
6 8wan:X 63 63 0.9365 0.9365 0.9365 2.00e-21
7 8wal:X 63 63 0.9206 0.9206 0.9206 3.34e-19
8 8wak:X 63 63 0.9048 0.9048 0.9048 1.55e-17
9 8was:Y 73 72 1.0000 0.8630 0.8750 2.01e-16
10 8war:Y 73 73 1.0000 0.8630 0.8630 2.60e-15
11 8waq:Y 73 73 0.9841 0.8493 0.8493 4.35e-13
12 8wap:Y 73 32 0.5079 0.4384 1.0000 5.63e-12
13 8wap:Y 73 29 0.4603 0.3973 1.0000 2.62e-10
14 8wao:Y 73 31 0.4921 0.4247 1.0000 2.02e-11
15 8wao:Y 73 29 0.4603 0.3973 1.0000 2.62e-10
16 8wav:X 43 30 0.4762 0.6977 1.0000 7.28e-11
17 8wan:Y 73 30 0.4762 0.4110 1.0000 7.28e-11
18 8wan:Y 73 33 0.5079 0.4384 0.9697 2.62e-10
19 8wal:Y 78 40 0.5873 0.4744 0.9250 7.28e-11
20 8wal:Y 78 29 0.4603 0.3718 1.0000 2.62e-10
21 8wak:Y 77 40 0.5873 0.4805 0.9250 7.28e-11
22 8wak:Y 77 28 0.4444 0.3636 1.0000 9.42e-10
23 8waw:Y 54 29 0.4603 0.5370 1.0000 2.62e-10
24 8waw:X 43 29 0.4603 0.6744 1.0000 2.62e-10
25 8wav:Y 54 29 0.4603 0.5370 1.0000 2.62e-10
26 8wau:Y 54 29 0.4603 0.5370 1.0000 2.62e-10
27 8wau:X 43 29 0.4603 0.6744 1.0000 2.62e-10
28 8wat:Y 54 29 0.4603 0.5370 1.0000 2.62e-10
29 8wat:X 43 29 0.4603 0.6744 1.0000 2.62e-10
30 8wax:Y 54 28 0.4444 0.5185 1.0000 9.42e-10
31 8wax:X 43 28 0.4444 0.6512 1.0000 9.42e-10

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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