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BioLiP
Download all results in tab-seperated text for 113 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a69:A (2.1) BS01 FMB 2.4.2.1 GO:0003824 ... P0ABP8 9653038 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    2 1a69:B (2.1) BS01 FMB 2.4.2.1 GO:0003824 ... P0ABP8 9653038 MOAD: Ki=5uM
    3 1a69:C (2.1) BS01 FMB 2.4.2.1 GO:0003824 ... P0ABP8 9653038 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    4 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    5 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    6 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    7 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    8 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    9 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    10 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    11 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    12 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    13 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    14 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    15 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    16 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    17 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    18 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    19 1oty:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    20 1oty:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    21 1oty:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    22 1ou4:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    23 1ou4:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    24 1ou4:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    25 1oum:A (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    26 1oum:B (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    27 1oum:C (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    28 1ov6:A (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    29 1ov6:B (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    30 1ov6:C (2.4) BS01 DBM 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    31 1ovg:A (2.2) BS01 MDR 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32 1ovg:B (2.2) BS01 MDR 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    33 1ovg:C (2.2) BS01 MDR 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    34 3ooe:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    35 3ooe:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    36 3ooe:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    37 3ooe:D (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    38 3ooe:E (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    39 3ooe:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    40 3ooe:F (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    41 3opv:A (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    42 3opv:B (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    43 3opv:C (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    44 3opv:D (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    45 3opv:E (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    46 3opv:F (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    47 3opv:G (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    48 3opv:H (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    49 3opv:I (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    50 3opv:J (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    51 3opv:K (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    52 3opv:L (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 21672603
    53 3ut6:A (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    54 3ut6:A (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    55 3ut6:B (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    56 3ut6:B (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    57 3ut6:B (1.895) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    58 3ut6:C (1.895) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    59 3ut6:C (1.895) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    60 3ut6:C (1.895) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 22569248
    61 4ts3:A (2.3) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    62 4ts3:A (2.3) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    63 4ts3:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    64 4ts3:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    65 4ts3:C (2.3) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    66 4ts3:D (2.3) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    67 4ts3:D (2.3) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    68 4ts3:E (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    69 4ts3:F (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    70 4ts3:F (2.3) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    71 4ts9:A (1.77) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    72 4ts9:A (1.77) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    73 4ts9:B (1.77) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    74 4ts9:B (1.77) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    75 4ts9:C (1.77) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    76 4ts9:C (1.77) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    77 4ts9:C (1.77) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    78 4tta:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    79 4tta:A (2.0) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    80 4tta:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    81 4tta:C (2.0) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    82 4tta:C (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    83 4tta:D (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    84 4tta:D (2.0) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    85 4tta:E (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    86 4tta:F (2.0) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    87 4tta:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    88 4tti:A (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    89 4tti:A (1.89) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    90 4tti:A (1.89) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    91 4tti:B (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    92 4tti:C (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    93 4tti:C (1.89) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    94 4tti:C (1.89) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    95 4tti:D (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    96 4tti:D (1.89) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    97 4tti:E (1.89) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    98 4tti:F (1.89) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    99 4tti:F (1.89) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    100 4tti:F (1.89) BS03 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    101 4ttj:A (1.874) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    102 4ttj:A (1.874) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    103 4ttj:A (1.874) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    104 4ttj:B (1.874) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    105 4ttj:B (1.874) BS02 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    106 4ttj:D (1.874) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    107 4ttj:D (1.874) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    108 4ttj:D (1.874) BS03 FMC 2.4.2.1 GO:0003824 ... P0ABP8 30337572
    109 5iu6:A (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020 PDBbind: -logKd/Ki=3.89, Ki=0.13mM
    110 5iu6:B (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020 PDBbind: -logKd/Ki=3.89, Ki=0.13mM
    111 5iu6:C (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020
    112 6xz2:B (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    113 6xz2:C (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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