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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9f1c:AA (3.78) BS01 rna N/A N/A G1TZ76 39169182
    2 9f1c:AB (3.78) BS01 rna N/A N/A G1TIB4 39169182
    3 9f1c:AC (3.78) BS01 rna N/A N/A G1SK22 39169182
    4 9f1c:AC (3.78) BS02 ZN N/A N/A G1SK22 39169182
    5 9f1c:AD (3.78) BS01 rna N/A N/A G1T8A2 39169182
    6 9f1c:AE (3.78) BS01 rna N/A N/A N/A 39169182
    7 9f1c:AE (3.78) BS02 ZN N/A N/A N/A 39169182
    8 9f1c:AF (3.78) BS01 rna N/A N/A G1SJB4 39169182
    9 9f1c:AG (3.78) BS01 rna N/A N/A G1U7M4 39169182
    10 9f1c:AG (3.78) BS02 ZN N/A N/A G1U7M4 39169182
    11 9f1c:AZ (3.78) BS01 rna N/A N/A G1TLT8 39169182
    12 9f1c:Aa (3.78) BS01 rna N/A N/A G1SS70 39169182
    13 9f1c:Ab (3.78) BS01 rna N/A N/A N/A 39169182
    14 9f1c:Ac (3.78) BS01 rna N/A N/A G1TNM3 39169182
    15 9f1c:Ad (3.78) BS01 rna N/A N/A G1TK17 39169182
    16 9f1c:Ae (3.78) BS01 rna N/A N/A G1TFM5 39169182
    17 9f1c:Af (3.78) BS01 rna N/A N/A G1TM55 39169182
    18 9f1c:Ag (3.78) BS01 rna N/A N/A G1SVB0 39169182
    19 9f1c:Ah (3.78) BS01 rna N/A N/A G1TJW1 39169182
    20 9f1c:Ah (3.78) BS02 rna N/A N/A G1TJW1 39169182
    21 9f1c:Ai (3.78) BS01 rna N/A N/A B7NZS8 39169182
    22 9f1c:Aj (3.78) BS01 rna N/A N/A G1TPV3 39169182
    23 9f1c:Ak (3.78) BS01 rna N/A N/A G1TRM4 39169182
    24 9f1c:Al (3.78) BS01 rna N/A N/A G1SFR8 39169182
    25 9f1c:Am (3.78) BS01 rna N/A N/A G1SP51 39169182
    26 9f1c:Am (3.78) BS02 rna N/A N/A G1SP51 39169182
    27 9f1c:An (3.78) BS01 rna N/A N/A A0AAA9WYR1 39169182
    28 9f1c:Ao (3.78) BS01 rna N/A N/A G1U0Q2 39169182
    29 9f1c:Ao (3.78) BS02 rna N/A N/A G1U0Q2 39169182
    30 9f1c:Ap (3.78) BS01 rna N/A N/A G1SGX4 39169182
    31 9f1c:Aq (3.78) BS01 rna N/A N/A G1TU13 39169182
    32 9f1c:Ar (3.78) BS01 rna N/A N/A G1TPG3 39169182
    33 9f1c:As (3.78) BS01 rna N/A N/A G1TN62 39169182
    34 9f1c:At (3.78) BS01 rna N/A N/A G1SIZ2 39169182
    35 9f1c:Av (3.78) BS01 rna N/A N/A G1TG89 39169182
    36 9f1c:Aw (3.78) BS01 rna N/A N/A G1SZ47 39169182
    37 9f1c:Ax (3.78) BS01 rna N/A N/A G1T3D8 39169182
    38 9f1c:Ay (3.78) BS01 rna N/A N/A G1TDB3 39169182
    39 9f1c:Ay (3.78) BS02 rna N/A N/A G1TDB3 39169182
    40 9f1c:B (3.78) BS01 rna N/A N/A G1SZF4 39169182
    41 9f1c:B (3.78) BS02 rna N/A N/A G1SZF4 39169182
    42 9f1c:B (3.78) BS03 GTP N/A N/A G1SZF4 39169182
    43 9f1c:BA (3.78) BS01 rna N/A N/A G1TT27 39169182
    44 9f1c:BA (3.78) BS02 rna N/A N/A G1TT27 39169182
    45 9f1c:BB (3.78) BS01 rna N/A N/A G1TL06 39169182
    46 9f1c:BC (3.78) BS01 rna N/A N/A G1SVW5 39169182
    47 9f1c:BC (3.78) BS02 rna N/A N/A G1SVW5 39169182
    48 9f1c:BE (3.78) BS01 rna N/A N/A G1SKF7 39169182
    49 9f1c:BF (3.78) BS01 rna N/A N/A G1TUB1 39169182
    50 9f1c:BF (3.78) BS02 rna N/A N/A G1TUB1 39169182
    51 9f1c:BG (3.78) BS01 rna N/A N/A N/A 39169182
    52 9f1c:BG (3.78) BS02 rna N/A N/A N/A 39169182
    53 9f1c:BH (3.78) BS01 rna N/A N/A G1SWI6 39169182
    54 9f1c:BI (3.78) BS01 rna N/A N/A B7NZQ2 39169182
    55 9f1c:BI (3.78) BS02 rna N/A N/A B7NZQ2 39169182
    56 9f1c:BI (3.78) BS03 rna N/A N/A B7NZQ2 39169182
    57 9f1c:BJ (3.78) BS01 rna N/A N/A G1TUB8 39169182
    58 9f1c:BJ (3.78) BS02 rna N/A N/A G1TUB8 39169182
    59 9f1c:BJ (3.78) BS03 rna N/A N/A G1TUB8 39169182
    60 9f1c:BK (3.78) BS01 rna N/A N/A N/A 39169182
    61 9f1c:BK (3.78) BS02 rna N/A N/A N/A 39169182
    62 9f1c:BL (3.78) BS01 rna N/A N/A G1TKB3 39169182
    63 9f1c:BL (3.78) BS02 rna N/A N/A G1TKB3 39169182
    64 9f1c:BM (3.78) BS01 rna N/A N/A G1SZ12 39169182
    65 9f1c:BN (3.78) BS01 rna N/A N/A G1T0C1 39169182
    66 9f1c:BN (3.78) BS02 rna N/A N/A G1T0C1 39169182
    67 9f1c:BO (3.78) BS01 rna N/A N/A G1TVS8 39169182
    68 9f1c:BP (3.78) BS01 rna N/A N/A G1SCJ6 39169182
    69 9f1c:BP (3.78) BS02 rna N/A N/A G1SCJ6 39169182
    70 9f1c:BQ (3.78) BS01 rna N/A N/A N/A 39169182
    71 9f1c:BR (3.78) BS01 rna N/A N/A G1TJR3 39169182
    72 9f1c:BR (3.78) BS02 rna N/A N/A G1TJR3 39169182
    73 9f1c:BS (3.78) BS01 rna N/A N/A G1TTY7 39169182
    74 9f1c:BS (3.78) BS02 rna N/A N/A G1TTY7 39169182
    75 9f1c:BT (3.78) BS01 rna N/A N/A G1SHQ2 39169182
    76 9f1c:BT (3.78) BS02 rna N/A N/A G1SHQ2 39169182
    77 9f1c:BU (3.78) BS01 rna N/A N/A G1TSG1 39169182
    78 9f1c:BV (3.78) BS01 rna N/A N/A G1T6D1 39169182
    79 9f1c:BW (3.78) BS01 rna N/A N/A G1SE28 39169182
    80 9f1c:BW (3.78) BS02 rna N/A N/A G1SE28 39169182
    81 9f1c:BX (3.78) BS01 rna N/A N/A G1SE76 39169182
    82 9f1c:BX (3.78) BS02 rna N/A N/A G1SE76 39169182
    83 9f1c:BY (3.78) BS01 rna N/A N/A G1SQH0 39169182
    84 9f1c:BY (3.78) BS02 rna N/A N/A G1SQH0 39169182
    85 9f1c:BZ (3.78) BS01 rna N/A N/A G1TXF6 39169182
    86 9f1c:Ba (3.78) BS01 rna N/A N/A G1SNY0 39169182
    87 9f1c:Bb (3.78) BS01 rna N/A N/A G1SGR6 39169182
    88 9f1c:Bc (3.78) BS01 rna N/A N/A G1TDL2 39169182
    89 9f1c:Bd (3.78) BS01 rna N/A N/A G1SHG0 39169182
    90 9f1c:Be (3.78) BS01 rna N/A N/A A0AAA9WVN6 39169182
    91 9f1c:Bf (3.78) BS01 rna N/A N/A G1SF08 39169182
    92 9f1c:Bg (3.78) BS01 rna N/A N/A G1TXG5 39169182
    93 9f1c:Bg (3.78) BS02 ZN N/A N/A G1TXG5 39169182
    94 9f1c:Bh (3.78) BS01 rna N/A N/A G1SIT5 39169182
    95 9f1c:Bh (3.78) BS02 rna N/A N/A G1SIT5 39169182
    96 9f1c:Bi (3.78) BS01 rna N/A N/A G1TTQ5 39169182
    97 9f1c:Bj (3.78) BS01 rna N/A N/A U3KPD5 39169182
    98 9f1c:Bj (3.78) BS02 rna N/A N/A U3KPD5 39169182
    99 9f1c:Bj (3.78) BS03 ZN N/A N/A U3KPD5 39169182
    100 9f1c:Bk (3.78) BS01 rna N/A N/A G1U001 39169182
    101 9f1c:Bl (3.78) BS01 rna N/A N/A G1TTN1 39169182
    102 9f1c:Bl (3.78) BS02 rna N/A N/A G1TTN1 39169182
    103 9f1c:Bm (3.78) BS01 rna N/A N/A P0DXC2 39169182
    104 9f1c:Bm (3.78) BS02 ZN N/A N/A P0DXC2 39169182
    105 9f1c:Bo (3.78) BS01 rna N/A N/A A0AAA9WX15 39169182
    106 9f1c:Bo (3.78) BS02 ZN N/A N/A A0AAA9WX15 39169182
    107 9f1c:Bp (3.78) BS01 rna N/A N/A G1SY53 39169182
    108 9f1c:Bp (3.78) BS02 ZN N/A N/A G1SY53 39169182
    109 9f1c:Br (3.78) BS01 rna N/A N/A G1U7L1 39169182
    110 9f1c:Bs (3.78) BS01 rna N/A N/A G1SPK4 39169182
    111 9f1c:Bt (3.78) BS01 rna N/A N/A G1SMR7 39169182
    112 9f1c:Cu (3.78) BS01 rna N/A N/A P20290 39169182
    113 9f1c:DB (3.78) BS01 rna N/A N/A Q9BXJ9 39169182
    114 9f1c:DB (3.78) BS02 IHP N/A N/A Q9BXJ9 39169182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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