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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9cg5:0 (2.59) BS01 rna N/A N/A C3SME7 39222680
    2 9cg5:1 (2.59) BS01 rna N/A N/A B7MGC4 39222680
    3 9cg5:2 (2.59) BS01 rna N/A N/A P0A7Q1 39222680
    4 9cg5:3 (2.59) BS01 rna N/A N/A A0A0E2L017 39222680
    5 9cg5:3 (2.59) BS02 ZN N/A N/A A0A0E2L017 39222680
    6 9cg5:4 (2.59) BS01 rna N/A N/A P0A7N0 39222680
    7 9cg5:4 (2.59) BS02 rna N/A N/A P0A7N0 39222680
    8 9cg5:4 (2.59) BS03 ZN N/A N/A P0A7N0 39222680
    9 9cg5:B (2.59) BS01 rna N/A N/A C3TPN2 39222680
    10 9cg5:C (2.59) BS01 rna N/A N/A B7MCS9 39222680
    11 9cg5:D (2.59) BS01 rna N/A N/A P0A7V8 39222680
    12 9cg5:E (2.59) BS01 rna N/A N/A P0A7W1 39222680
    13 9cg5:F (2.59) BS01 rna N/A N/A P02358 39222680
    14 9cg5:G (2.59) BS01 rna N/A N/A P02359 39222680
    15 9cg5:H (2.59) BS01 rna N/A N/A C3SR12 39222680
    16 9cg5:I (2.59) BS01 rna N/A N/A C3SRY2 39222680
    17 9cg5:I (2.59) BS02 rna N/A N/A C3SRY2 39222680
    18 9cg5:J (2.59) BS01 rna N/A N/A C3SQT7 39222680
    19 9cg5:K (2.59) BS01 rna N/A N/A C3SR57 39222680
    20 9cg5:K (2.59) BS02 IAS N/A N/A C3SR57 39222680
    21 9cg5:L (2.59) BS01 rna N/A N/A A0A0F1AUC4 39222680
    22 9cg5:M (2.59) BS01 rna N/A N/A A0A7U9IV78 39222680
    23 9cg5:M (2.59) BS02 rna N/A N/A A0A7U9IV78 39222680
    24 9cg5:N (2.59) BS01 rna N/A N/A A0A2X1PQW4 39222680
    25 9cg5:O (2.59) BS01 rna N/A N/A C3SSQ7 39222680
    26 9cg5:O (2.59) BS02 rna N/A N/A C3SSQ7 39222680
    27 9cg5:P (2.59) BS01 rna N/A N/A C3SYP2 39222680
    28 9cg5:Q (2.59) BS01 rna N/A N/A C3SQY7 39222680
    29 9cg5:R (2.59) BS01 rna N/A N/A A0A0E2KXL3 39222680
    30 9cg5:S (2.59) BS01 rna N/A N/A C3SQW2 39222680
    31 9cg5:T (2.59) BS01 rna N/A N/A C3TRH7 39222680
    32 9cg5:U (2.59) BS01 rna N/A N/A A0A0E2L2J1 39222680
    33 9cg5:c (2.59) BS01 rna N/A N/A P60422 39222680
    34 9cg5:d (2.59) BS01 rna N/A N/A C3SQU2 39222680
    35 9cg5:e (2.59) BS01 rna N/A N/A A1AGK6 39222680
    36 9cg5:f (2.59) BS01 rna N/A N/A A0A140N5A3 39222680
    37 9cg5:f (2.59) BS02 rna N/A N/A A0A140N5A3 39222680
    38 9cg5:f (2.59) BS03 rna N/A N/A A0A140N5A3 39222680
    39 9cg5:g (2.59) BS01 rna N/A N/A C3SR17 39222680
    40 9cg5:h (2.59) BS01 rna N/A N/A C3SFP2 39222680
    41 9cg5:i (2.59) BS01 rna N/A N/A P0AA12 39222680
    42 9cg5:j (2.59) BS01 rna N/A N/A S1NW45 39222680
    43 9cg5:j (2.59) BS02 rna N/A N/A S1NW45 39222680
    44 9cg5:k (2.59) BS01 rna N/A N/A A0A037Y8L6 39222680
    45 9cg5:l (2.59) BS01 rna N/A N/A A1AGK1 39222680
    46 9cg5:l (2.59) BS02 rna N/A N/A A1AGK1 39222680
    47 9cg5:m (2.59) BS01 rna N/A N/A C3SR72 39222680
    48 9cg5:n (2.59) BS01 rna N/A N/A A0A828U007 39222680
    49 9cg5:n (2.59) BS02 rna N/A N/A A0A828U007 39222680
    50 9cg5:o (2.59) BS01 rna N/A N/A P0A7K8 39222680
    51 9cg5:o (2.59) BS02 rna N/A N/A P0A7K8 39222680
    52 9cg5:p (2.59) BS01 rna N/A N/A B7MAS6 39222680
    53 9cg5:q (2.59) BS01 rna N/A N/A C3SSG2 39222680
    54 9cg5:r (2.59) BS01 rna N/A N/A P61175 39222680
    55 9cg5:s (2.59) BS01 rna N/A N/A C3SQV2 39222680
    56 9cg5:t (2.59) BS01 rna N/A N/A C3SQZ7 39222680
    57 9cg5:u (2.59) BS01 rna N/A N/A P68919 39222680
    58 9cg5:v (2.59) BS01 rna N/A N/A P0A7M0 39222680
    59 9cg5:v (2.59) BS02 rna N/A N/A P0A7M0 39222680
    60 9cg5:w (2.59) BS01 rna N/A N/A A0A1X3JA73 39222680
    61 9cg5:x (2.59) BS01 rna N/A N/A C3SQY2 39222680
    62 9cg5:y (2.59) BS01 rna N/A N/A C3SR32 39222680
    63 9cg5:z (2.59) BS01 rna N/A N/A C3TE02 39222680
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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