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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    2 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    3 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    4 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    5 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    6 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    7 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    8 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    9 8yop:LE (2.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    10 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    11 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    12 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    13 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    14 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    15 8yop:LI (2.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    16 8yop:LI (2.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    17 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    18 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    19 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    20 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    21 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    22 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    23 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    24 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    25 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    26 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    27 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    28 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    29 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    30 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    31 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    32 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    33 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    34 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    35 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    36 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    37 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    38 8yop:LX (2.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    39 8yop:LX (2.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    40 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    41 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    42 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    43 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    44 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    45 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    46 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    47 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    48 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    49 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    50 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    51 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    52 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    53 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    54 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    55 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    56 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    57 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    58 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    59 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    60 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    61 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    62 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    63 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    64 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    65 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    66 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    67 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    68 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    69 8yop:Ls (2.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    70 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    71 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    72 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    73 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    74 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    75 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    76 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    77 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    78 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    79 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    80 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    81 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    82 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    83 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    84 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    85 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    86 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    87 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    88 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    89 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    90 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    91 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    92 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    93 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    94 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    95 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    96 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    97 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    98 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    99 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    100 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    101 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    102 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    103 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    104 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    105 8yop:Se (2.2) BS01 rna N/A N/A P62861 38942792
    106 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    107 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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