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BioLiP
Download all results in tab-seperated text for 101 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    2 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    3 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    4 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    5 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    6 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    7 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    8 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    9 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    10 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    11 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    12 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    13 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    14 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    15 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    16 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    17 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    18 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    19 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    20 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    21 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    22 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    23 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    24 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    25 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    26 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    27 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    28 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    29 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    30 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    31 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    32 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    33 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    34 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    35 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    36 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    37 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    38 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    39 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    40 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    41 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    42 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    43 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    44 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    45 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    46 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    47 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    48 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    49 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    50 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    51 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    52 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    53 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    54 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    55 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    56 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    57 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    58 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    59 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    60 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    61 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    62 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    63 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    64 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    65 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    66 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    67 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    68 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    69 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    70 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    71 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    72 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    73 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    74 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    75 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    76 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    77 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    78 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    79 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    80 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    81 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    82 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    83 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    84 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    85 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    86 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    87 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    88 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    89 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    90 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    91 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    92 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    93 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    94 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    95 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    96 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    97 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    98 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    99 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    100 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    101 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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