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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 262 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uvr:10 (2.6) BS01 rna N/A N/A P60493 38165935
    2 8uvr:10 (2.6) BS02 rna N/A N/A P60493 38165935
    3 8uvr:10 (2.6) BS03 MG N/A N/A P60493 38165935
    4 8uvr:10 (2.6) BS04 MG N/A N/A P60493 38165935
    5 8uvr:11 (2.6) BS01 rna N/A N/A P60494 38165935
    6 8uvr:11 (2.6) BS02 MG N/A N/A P60494 38165935
    7 8uvr:12 (2.6) BS01 rna N/A N/A Q5SHP6 38165935
    8 8uvr:12 (2.6) BS02 MG N/A N/A Q5SHP6 38165935
    9 8uvr:13 (2.6) BS01 rna N/A N/A Q5SHQ6 38165935
    10 8uvr:13 (2.6) BS02 rna N/A N/A Q5SHQ6 38165935
    11 8uvr:13 (2.6) BS03 MG N/A N/A Q5SHQ6 38165935
    12 8uvr:13 (2.6) BS04 MG N/A N/A Q5SHQ6 38165935
    13 8uvr:14 (2.6) BS01 rna N/A N/A Q5SJE1 38165935
    14 8uvr:14 (2.6) BS02 ZN N/A N/A Q5SJE1 38165935
    15 8uvr:15 (2.6) BS01 rna N/A N/A P80339 38165935
    16 8uvr:15 (2.6) BS02 MG N/A N/A P80339 38165935
    17 8uvr:15 (2.6) BS03 MG N/A N/A P80339 38165935
    18 8uvr:15 (2.6) BS04 MG N/A N/A P80339 38165935
    19 8uvr:15 (2.6) BS05 MG N/A N/A P80339 38165935
    20 8uvr:15 (2.6) BS06 ZN N/A N/A P80339 38165935
    21 8uvr:16 (2.6) BS01 rna N/A N/A P35871 38165935
    22 8uvr:16 (2.6) BS02 MG N/A N/A P35871 38165935
    23 8uvr:16 (2.6) BS03 ZN N/A N/A P35871 38165935
    24 8uvr:17 (2.6) BS01 rna N/A N/A P80340 38165935
    25 8uvr:17 (2.6) BS02 MG N/A N/A P80340 38165935
    26 8uvr:17 (2.6) BS03 MG N/A N/A P80340 38165935
    27 8uvr:18 (2.6) BS01 rna N/A N/A Q5SKU1 38165935
    28 8uvr:18 (2.6) BS02 MG N/A N/A Q5SKU1 38165935
    29 8uvr:18 (2.6) BS03 MG N/A N/A Q5SKU1 38165935
    30 8uvr:18 (2.6) BS04 MG N/A N/A Q5SKU1 38165935
    31 8uvr:19 (2.6) BS01 rna N/A N/A Q5SHR2 38165935
    32 8uvr:19 (2.6) BS02 ZN N/A N/A Q5SHR2 38165935
    33 8uvr:1D (2.6) BS01 rna N/A N/A P60405 38165935
    34 8uvr:1D (2.6) BS02 rna N/A N/A P60405 38165935
    35 8uvr:1D (2.6) BS03 MG N/A N/A P60405 38165935
    36 8uvr:1D (2.6) BS04 MG N/A N/A P60405 38165935
    37 8uvr:1D (2.6) BS05 MG N/A N/A P60405 38165935
    38 8uvr:1D (2.6) BS06 MG N/A N/A P60405 38165935
    39 8uvr:1D (2.6) BS07 MG N/A N/A P60405 38165935
    40 8uvr:1D (2.6) BS08 MG N/A N/A P60405 38165935
    41 8uvr:1D (2.6) BS09 MG N/A N/A P60405 38165935
    42 8uvr:1D (2.6) BS10 MG N/A N/A P60405 38165935
    43 8uvr:1D (2.6) BS11 MG N/A N/A P60405 38165935
    44 8uvr:1D (2.6) BS12 MG N/A N/A P60405 38165935
    45 8uvr:1D (2.6) BS13 MG N/A N/A P60405 38165935
    46 8uvr:1E (2.6) BS01 rna N/A N/A Q5SHN8 38165935
    47 8uvr:1E (2.6) BS02 MG N/A N/A Q5SHN8 38165935
    48 8uvr:1E (2.6) BS03 MG N/A N/A Q5SHN8 38165935
    49 8uvr:1E (2.6) BS04 MG N/A N/A Q5SHN8 38165935
    50 8uvr:1E (2.6) BS05 MG N/A N/A Q5SHN8 38165935
    51 8uvr:1E (2.6) BS06 MG N/A N/A Q5SHN8 38165935
    52 8uvr:1F (2.6) BS01 rna N/A N/A Q5SHN9 38165935
    53 8uvr:1F (2.6) BS02 MG N/A N/A Q5SHN9 38165935
    54 8uvr:1F (2.6) BS03 MG N/A N/A Q5SHN9 38165935
    55 8uvr:1F (2.6) BS04 MG N/A N/A Q5SHN9 38165935
    56 8uvr:1F (2.6) BS05 MG N/A N/A Q5SHN9 38165935
    57 8uvr:1F (2.6) BS06 MG N/A N/A Q5SHN9 38165935
    58 8uvr:1F (2.6) BS07 MG N/A N/A Q5SHN9 38165935
    59 8uvr:1F (2.6) BS08 MG N/A N/A Q5SHN9 38165935
    60 8uvr:1F (2.6) BS09 MG N/A N/A Q5SHN9 38165935
    61 8uvr:1F (2.6) BS10 MG N/A N/A Q5SHN9 38165935
    62 8uvr:1G (2.6) BS01 rna N/A N/A Q5SHQ0 38165935
    63 8uvr:1G (2.6) BS02 rna N/A N/A Q5SHQ0 38165935
    64 8uvr:1G (2.6) BS03 MG N/A N/A Q5SHQ0 38165935
    65 8uvr:1H (2.6) BS01 rna N/A N/A P0DOY8 38165935
    66 8uvr:1I (2.6) BS01 rna N/A N/A Q5SLQ1 38165935
    67 8uvr:1N (2.6) BS01 rna N/A N/A P60488 38165935
    68 8uvr:1N (2.6) BS02 MG N/A N/A P60488 38165935
    69 8uvr:1N (2.6) BS03 MG N/A N/A P60488 38165935
    70 8uvr:1N (2.6) BS04 MG N/A N/A P60488 38165935
    71 8uvr:1O (2.6) BS01 rna N/A N/A Q5SHP8 38165935
    72 8uvr:1O (2.6) BS02 rna N/A N/A Q5SHP8 38165935
    73 8uvr:1O (2.6) BS03 MG N/A N/A Q5SHP8 38165935
    74 8uvr:1P (2.6) BS01 rna N/A N/A Q5SHQ7 38165935
    75 8uvr:1P (2.6) BS02 MG N/A N/A Q5SHQ7 38165935
    76 8uvr:1P (2.6) BS03 MG N/A N/A Q5SHQ7 38165935
    77 8uvr:1P (2.6) BS04 MG N/A N/A Q5SHQ7 38165935
    78 8uvr:1P (2.6) BS05 MG N/A N/A Q5SHQ7 38165935
    79 8uvr:1P (2.6) BS06 MG N/A N/A Q5SHQ7 38165935
    80 8uvr:1P (2.6) BS07 MG N/A N/A Q5SHQ7 38165935
    81 8uvr:1Q (2.6) BS01 rna N/A N/A P60489 38165935
    82 8uvr:1Q (2.6) BS02 rna N/A N/A P60489 38165935
    83 8uvr:1Q (2.6) BS03 rna N/A N/A P60489 38165935
    84 8uvr:1Q (2.6) BS04 MG N/A N/A P60489 38165935
    85 8uvr:1Q (2.6) BS05 MG N/A N/A P60489 38165935
    86 8uvr:1Q (2.6) BS06 MG N/A N/A P60489 38165935
    87 8uvr:1Q (2.6) BS07 MG N/A N/A P60489 38165935
    88 8uvr:1R (2.6) BS01 rna N/A N/A Q9Z9H5 38165935
    89 8uvr:1R (2.6) BS02 MG N/A N/A Q9Z9H5 38165935
    90 8uvr:1R (2.6) BS03 MG N/A N/A Q9Z9H5 38165935
    91 8uvr:1S (2.6) BS01 rna N/A N/A Q5SHQ4 38165935
    92 8uvr:1S (2.6) BS02 rna N/A N/A Q5SHQ4 38165935
    93 8uvr:1S (2.6) BS03 MG N/A N/A Q5SHQ4 38165935
    94 8uvr:1S (2.6) BS04 MG N/A N/A Q5SHQ4 38165935
    95 8uvr:1T (2.6) BS01 rna N/A N/A P60490 38165935
    96 8uvr:1T (2.6) BS02 rna N/A N/A P60490 38165935
    97 8uvr:1T (2.6) BS03 MG N/A N/A P60490 38165935
    98 8uvr:1U (2.6) BS01 rna N/A N/A P60491 38165935
    99 8uvr:1U (2.6) BS02 MG N/A N/A P60491 38165935
    100 8uvr:1U (2.6) BS03 MG N/A N/A P60491 38165935
    101 8uvr:1U (2.6) BS04 MG N/A N/A P60491 38165935
    102 8uvr:1U (2.6) BS05 MG N/A N/A P60491 38165935
    103 8uvr:1U (2.6) BS06 MG N/A N/A P60491 38165935
    104 8uvr:1U (2.6) BS07 MG N/A N/A P60491 38165935
    105 8uvr:1U (2.6) BS08 MG N/A N/A P60491 38165935
    106 8uvr:1U (2.6) BS09 MG N/A N/A P60491 38165935
    107 8uvr:1U (2.6) BS10 MG N/A N/A P60491 38165935
    108 8uvr:1U (2.6) BS11 MG N/A N/A P60491 38165935
    109 8uvr:1V (2.6) BS01 rna N/A N/A P60492 38165935
    110 8uvr:1V (2.6) BS02 MG N/A N/A P60492 38165935
    111 8uvr:1V (2.6) BS03 MG N/A N/A P60492 38165935
    112 8uvr:1V (2.6) BS04 MG N/A N/A P60492 38165935
    113 8uvr:1V (2.6) BS05 MG N/A N/A P60492 38165935
    114 8uvr:1V (2.6) BS06 MG N/A N/A P60492 38165935
    115 8uvr:1V (2.6) BS07 MG N/A N/A P60492 38165935
    116 8uvr:1W (2.6) BS01 rna N/A N/A Q5SHP3 38165935
    117 8uvr:1W (2.6) BS02 MG N/A N/A Q5SHP3 38165935
    118 8uvr:1W (2.6) BS03 MG N/A N/A Q5SHP3 38165935
    119 8uvr:1W (2.6) BS04 MG N/A N/A Q5SHP3 38165935
    120 8uvr:1W (2.6) BS05 MG N/A N/A Q5SHP3 38165935
    121 8uvr:1W (2.6) BS06 MG N/A N/A Q5SHP3 38165935
    122 8uvr:1X (2.6) BS01 rna N/A N/A Q5SHP0 38165935
    123 8uvr:1X (2.6) BS02 MG N/A N/A Q5SHP0 38165935
    124 8uvr:1X (2.6) BS03 MG N/A N/A Q5SHP0 38165935
    125 8uvr:1X (2.6) BS04 MG N/A N/A Q5SHP0 38165935
    126 8uvr:1X (2.6) BS05 MG N/A N/A Q5SHP0 38165935
    127 8uvr:1X (2.6) BS06 MG N/A N/A Q5SHP0 38165935
    128 8uvr:1Y (2.6) BS01 rna N/A N/A Q5SHP9 38165935
    129 8uvr:1Y (2.6) BS02 MG N/A N/A Q5SHP9 38165935
    130 8uvr:1Y (2.6) BS03 ZN N/A N/A Q5SHP9 38165935
    131 8uvr:1Z (2.6) BS01 rna N/A N/A Q5SHZ1 38165935
    132 8uvr:1Z (2.6) BS02 rna N/A N/A Q5SHZ1 38165935
    133 8uvr:1b (2.6) BS01 rna N/A N/A P80371 38165935
    134 8uvr:1c (2.6) BS01 rna N/A N/A P80372 38165935
    135 8uvr:1d (2.6) BS01 rna N/A N/A P80373 38165935
    136 8uvr:1d (2.6) BS02 SF4 N/A N/A P80373 38165935
    137 8uvr:1e (2.6) BS01 rna N/A N/A Q5SHQ5 38165935
    138 8uvr:1e (2.6) BS02 SCM N/A N/A Q5SHQ5 38165935
    139 8uvr:1f (2.6) BS01 rna N/A N/A Q5SLP8 38165935
    140 8uvr:1f (2.6) BS02 MG N/A N/A Q5SLP8 38165935
    141 8uvr:1f (2.6) BS03 MG N/A N/A Q5SLP8 38165935
    142 8uvr:1g (2.6) BS01 rna N/A N/A P17291 38165935
    143 8uvr:1g (2.6) BS02 rna N/A N/A P17291 38165935
    144 8uvr:1h (2.6) BS01 rna N/A N/A P0DOY9 38165935
    145 8uvr:1i (2.6) BS01 rna N/A N/A P80374 38165935
    146 8uvr:1i (2.6) BS02 rna N/A N/A P80374 38165935
    147 8uvr:1j (2.6) BS01 rna N/A N/A Q5SHN7 38165935
    148 8uvr:1k (2.6) BS01 rna N/A N/A P80376 38165935
    149 8uvr:1k (2.6) BS02 MG N/A N/A P80376 38165935
    150 8uvr:1l (2.6) BS01 rna N/A N/A Q5SHN3 38165935
    151 8uvr:1l (2.6) BS02 MG N/A N/A Q5SHN3 38165935
    152 8uvr:1m (2.6) BS01 rna N/A N/A P80377 38165935
    153 8uvr:1m (2.6) BS02 rna N/A N/A P80377 38165935
    154 8uvr:1m (2.6) BS03 rna N/A N/A P80377 38165935
    155 8uvr:1m (2.6) BS04 MG N/A N/A P80377 38165935
    156 8uvr:1n (2.6) BS01 rna N/A N/A P0DOY6 38165935
    157 8uvr:1n (2.6) BS02 MG N/A N/A P0DOY6 38165935
    158 8uvr:1n (2.6) BS03 ZN N/A N/A P0DOY6 38165935
    159 8uvr:1o (2.6) BS01 rna N/A N/A Q5SJ76 38165935
    160 8uvr:1o (2.6) BS02 rna N/A N/A Q5SJ76 38165935
    161 8uvr:1p (2.6) BS01 rna N/A N/A Q5SJH3 38165935
    162 8uvr:1q (2.6) BS01 rna N/A N/A P0DOY7 38165935
    163 8uvr:1r (2.6) BS01 rna N/A N/A Q5SLQ0 38165935
    164 8uvr:1s (2.6) BS01 rna N/A N/A Q5SHP2 38165935
    165 8uvr:1t (2.6) BS01 rna N/A N/A P80380 38165935
    166 8uvr:20 (2.6) BS01 rna N/A N/A P60493 38165935
    167 8uvr:20 (2.6) BS02 rna N/A N/A P60493 38165935
    168 8uvr:20 (2.6) BS03 rna N/A N/A P60493 38165935
    169 8uvr:21 (2.6) BS01 rna N/A N/A P60494 38165935
    170 8uvr:21 (2.6) BS02 MG N/A N/A P60494 38165935
    171 8uvr:22 (2.6) BS01 rna N/A N/A Q5SHP6 38165935
    172 8uvr:23 (2.6) BS01 rna N/A N/A Q5SHQ6 38165935
    173 8uvr:23 (2.6) BS02 rna N/A N/A Q5SHQ6 38165935
    174 8uvr:23 (2.6) BS03 MG N/A N/A Q5SHQ6 38165935
    175 8uvr:24 (2.6) BS01 rna N/A N/A Q5SJE1 38165935
    176 8uvr:24 (2.6) BS02 ZN N/A N/A Q5SJE1 38165935
    177 8uvr:25 (2.6) BS01 rna N/A N/A P80339 38165935
    178 8uvr:25 (2.6) BS02 MG N/A N/A P80339 38165935
    179 8uvr:25 (2.6) BS03 ZN N/A N/A P80339 38165935
    180 8uvr:26 (2.6) BS01 rna N/A N/A P35871 38165935
    181 8uvr:26 (2.6) BS02 ZN N/A N/A P35871 38165935
    182 8uvr:27 (2.6) BS01 rna N/A N/A P80340 38165935
    183 8uvr:27 (2.6) BS02 MG N/A N/A P80340 38165935
    184 8uvr:28 (2.6) BS01 rna N/A N/A Q5SKU1 38165935
    185 8uvr:28 (2.6) BS02 MG N/A N/A Q5SKU1 38165935
    186 8uvr:29 (2.6) BS01 rna N/A N/A Q5SHR2 38165935
    187 8uvr:29 (2.6) BS02 MG N/A N/A Q5SHR2 38165935
    188 8uvr:29 (2.6) BS03 ZN N/A N/A Q5SHR2 38165935
    189 8uvr:2D (2.6) BS01 rna N/A N/A P60405 38165935
    190 8uvr:2D (2.6) BS02 rna N/A N/A P60405 38165935
    191 8uvr:2D (2.6) BS03 MG N/A N/A P60405 38165935
    192 8uvr:2D (2.6) BS04 MG N/A N/A P60405 38165935
    193 8uvr:2D (2.6) BS05 MG N/A N/A P60405 38165935
    194 8uvr:2D (2.6) BS06 MG N/A N/A P60405 38165935
    195 8uvr:2D (2.6) BS07 MG N/A N/A P60405 38165935
    196 8uvr:2E (2.6) BS01 rna N/A N/A Q5SHN8 38165935
    197 8uvr:2E (2.6) BS02 MG N/A N/A Q5SHN8 38165935
    198 8uvr:2F (2.6) BS01 rna N/A N/A Q5SHN9 38165935
    199 8uvr:2F (2.6) BS02 MG N/A N/A Q5SHN9 38165935
    200 8uvr:2F (2.6) BS03 MG N/A N/A Q5SHN9 38165935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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