Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8upo:0 (5.5) BS01 rna N/A N/A N/A 39117885
    2 8upo:1 (5.5) BS01 rna ? GO:0002181 ... P61175 39117885
    3 8upo:2 (5.5) BS01 rna N/A N/A N/A 39117885
    4 8upo:3 (5.5) BS01 rna N/A N/A N/A 39117885
    5 8upo:4 (5.5) BS01 rna N/A N/A N/A 39117885
    6 8upo:9 (5.5) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    7 8upo:AA (5.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    8 8upo:AA (5.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    9 8upo:AA (5.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    10 8upo:AB (5.5) BS01 dna ? GO:0001073 ... C3SK02 39117885
    11 8upo:AE (5.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    12 8upo:AE (5.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    13 8upo:AE (5.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    14 8upo:AE (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    15 8upo:AE (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    16 8upo:AE (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    17 8upo:C (5.5) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    18 8upo:E (5.5) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    19 8upo:F (5.5) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    20 8upo:G (5.5) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    21 8upo:I (5.5) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    22 8upo:J (5.5) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    23 8upo:K (5.5) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    24 8upo:K (5.5) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    25 8upo:L (5.5) BS01 rna ? GO:0002181 ... P02358 39117885
    26 8upo:M (5.5) BS01 rna ? GO:0000028 ... P02359 39117885
    27 8upo:M (5.5) BS02 rna ? GO:0000028 ... P02359 39117885
    28 8upo:N (5.5) BS01 rna N/A N/A N/A 39117885
    29 8upo:O (5.5) BS01 rna N/A N/A N/A 39117885
    30 8upo:P (5.5) BS01 rna N/A N/A N/A 39117885
    31 8upo:Q (5.5) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    32 8upo:R (5.5) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    33 8upo:S (5.5) BS01 rna N/A N/A N/A 39117885
    34 8upo:T (5.5) BS01 rna N/A N/A N/A 39117885
    35 8upo:T (5.5) BS02 rna N/A N/A N/A 39117885
    36 8upo:U (5.5) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    37 8upo:V (5.5) BS01 rna N/A N/A N/A 39117885
    38 8upo:W (5.5) BS01 rna N/A N/A N/A 39117885
    39 8upo:X (5.5) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    40 8upo:X (5.5) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    41 8upo:Y (5.5) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    42 8upo:b (5.5) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    43 8upo:b (5.5) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    44 8upo:c (5.5) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    45 8upo:e (5.5) BS01 rna N/A N/A N/A 39117885
    46 8upo:f (5.5) BS01 rna N/A N/A N/A 39117885
    47 8upo:f (5.5) BS02 rna N/A N/A N/A 39117885
    48 8upo:g (5.5) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    49 8upo:h (5.5) BS01 rna ? GO:0000027 ... P60422 39117885
    50 8upo:i (5.5) BS01 rna N/A N/A N/A 39117885
    51 8upo:j (5.5) BS01 rna ? GO:0000027 ... P60438 39117885
    52 8upo:k (5.5) BS01 rna N/A N/A N/A 39117885
    53 8upo:l (5.5) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    54 8upo:m (5.5) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    55 8upo:n (5.5) BS01 rna N/A N/A N/A 39117885
    56 8upo:n (5.5) BS02 rna N/A N/A N/A 39117885
    57 8upo:n (5.5) BS03 rna N/A N/A N/A 39117885
    58 8upo:o (5.5) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    59 8upo:p (5.5) BS01 rna ? GO:0002181 ... C3SR17 39117885
    60 8upo:q (5.5) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    61 8upo:r (5.5) BS01 rna N/A N/A N/A 39117885
    62 8upo:s (5.5) BS01 rna N/A N/A N/A 39117885
    63 8upo:t (5.5) BS01 rna ? GO:0003735 ... S1NW45 39117885
    64 8upo:t (5.5) BS02 rna ? GO:0003735 ... S1NW45 39117885
    65 8upo:u (5.5) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    66 8upo:v (5.5) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    67 8upo:v (5.5) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    68 8upo:w (5.5) BS01 rna N/A N/A N/A 39117885
    69 8upo:x (5.5) BS01 rna N/A N/A N/A 39117885
    70 8upo:x (5.5) BS02 rna N/A N/A N/A 39117885
    71 8upo:y (5.5) BS01 rna N/A N/A N/A 39117885
    72 8upo:z (5.5) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218