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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    2 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    3 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    4 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    5 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    6 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    7 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    8 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    9 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    10 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    11 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    12 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    13 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    14 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    15 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    16 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    17 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    18 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    19 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    20 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    21 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    22 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    23 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    24 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    25 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    26 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    27 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    28 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    29 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    30 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    31 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    32 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    33 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    34 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    35 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    36 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    37 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    38 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    39 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    40 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    41 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    42 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    43 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    44 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    45 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    46 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    47 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    48 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    49 8uk3:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    50 8uk3:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    51 8uk3:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    52 8uk3:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    53 8uk3:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    54 8uk3:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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