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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8syl:1 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 37537169
    2 8syl:2 (2.9) BS01 rna ? GO:0000027 ... P0AG51 37537169
    3 8syl:2 (2.9) BS02 rna ? GO:0000027 ... P0AG51 37537169
    4 8syl:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 37537169
    5 8syl:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 37537169
    6 8syl:4 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 37537169
    7 8syl:5 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 37537169
    8 8syl:6 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 37537169
    9 8syl:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 37537169
    10 8syl:8 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 37537169
    11 8syl:8 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 37537169
    12 8syl:C (2.9) BS01 rna ? GO:0000027 ... P60422 37537169
    13 8syl:C (2.9) BS02 rna ? GO:0000027 ... P60422 37537169
    14 8syl:C (2.9) BS03 MG ? GO:0000027 ... P60422 37537169
    15 8syl:D (2.9) BS01 rna ? GO:0000027 ... P60438 37537169
    16 8syl:E (2.9) BS01 rna ? GO:0001070 ... P60723 37537169
    17 8syl:F (2.9) BS01 rna ? GO:0000027 ... P62399 37537169
    18 8syl:F (2.9) BS02 rna ? GO:0000027 ... P62399 37537169
    19 8syl:F (2.9) BS03 rna ? GO:0000027 ... P62399 37537169
    20 8syl:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 37537169
    21 8syl:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 37537169
    22 8syl:L (2.9) BS01 rna ? GO:0002181 ... P0AA10 37537169
    23 8syl:M (2.9) BS01 rna ? GO:0002181 ... P0ADY3 37537169
    24 8syl:M (2.9) BS02 rna ? GO:0002181 ... P0ADY3 37537169
    25 8syl:N (2.9) BS01 rna ? GO:0002181 ... P02413 37537169
    26 8syl:O (2.9) BS01 rna ? GO:0000027 ... P0ADY7 37537169
    27 8syl:O (2.9) BS02 rna ? GO:0000027 ... P0ADY7 37537169
    28 8syl:O (2.9) BS03 rna ? GO:0000027 ... P0ADY7 37537169
    29 8syl:P (2.9) BS01 rna ? GO:0000027 ... P0AG44 37537169
    30 8syl:Q (2.9) BS01 rna ? GO:0002181 ... P0C018 37537169
    31 8syl:Q (2.9) BS02 rna ? GO:0002181 ... P0C018 37537169
    32 8syl:R (2.9) BS01 rna ? GO:0000027 ... P0A7K6 37537169
    33 8syl:R (2.9) BS02 rna ? GO:0000027 ... P0A7K6 37537169
    34 8syl:S (2.9) BS01 rna ? GO:0000027 ... P0A7L3 37537169
    35 8syl:T (2.9) BS01 rna ? GO:0002181 ... P0AG48 37537169
    36 8syl:U (2.9) BS01 rna ? GO:0002181 ... P61175 37537169
    37 8syl:V (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 37537169
    38 8syl:W (2.9) BS01 rna ? GO:0000027 ... P60624 37537169
    39 8syl:X (2.9) BS01 rna ? GO:0000027 ... P68919 37537169
    40 8syl:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 37537169
    41 8syl:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 37537169
    42 8syl:Y (2.9) BS03 rna ? GO:0000027 ... P0A7L8 37537169
    43 8syl:Z (2.9) BS01 rna ? GO:0000027 ... P0A7M2 37537169
    44 8syl:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 37537169
    45 8syl:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 37537169
    46 8syl:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 37537169
    47 8syl:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 37537169
    48 8syl:f (2.9) BS01 rna ? GO:0002181 ... P02358 37537169
    49 8syl:g (2.9) BS01 rna ? GO:0003723 ... P02359 37537169
    50 8syl:g (2.9) BS02 rna ? GO:0003723 ... P02359 37537169
    51 8syl:h (2.9) BS01 rna ? GO:0000028 ... P0A7W7 37537169
    52 8syl:i (2.9) BS01 rna ? GO:0000049 ... P0A7X3 37537169
    53 8syl:i (2.9) BS02 rna ? GO:0000049 ... P0A7X3 37537169
    54 8syl:j (2.9) BS01 rna ? GO:0000049 ... P0A7R5 37537169
    55 8syl:k (2.9) BS01 rna ? GO:0002181 ... P0A7R9 37537169
    56 8syl:l (2.9) BS01 rna ? GO:0000049 ... P0A7S3 37537169
    57 8syl:l (2.9) BS02 rna ? GO:0000049 ... P0A7S3 37537169
    58 8syl:m (2.9) BS01 rna ? GO:0000049 ... P0A7S9 37537169
    59 8syl:m (2.9) BS02 rna ? GO:0000049 ... P0A7S9 37537169
    60 8syl:n (2.9) BS01 rna ? GO:0000028 ... P0AG59 37537169
    61 8syl:o (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 37537169
    62 8syl:o (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 37537169
    63 8syl:p (2.9) BS01 rna ? GO:0000028 ... P0A7T3 37537169
    64 8syl:q (2.9) BS01 rna ? GO:0000028 ... P0AG63 37537169
    65 8syl:r (2.9) BS01 rna ? GO:0002181 ... P0A7T7 37537169
    66 8syl:s (2.9) BS01 rna ? GO:0000028 ... P0A7U3 37537169
    67 8syl:t (2.9) BS01 rna ? GO:0000028 ... P0A7U7 37537169
    68 8syl:u (2.9) BS01 rna ? GO:0000028 ... P68679 37537169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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