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BioLiP
Download all results in tab-seperated text for 125 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8scb:A (2.5) BS01 rna ? GO:0002181 ... G1TT27 38172604
    2 8scb:A (2.5) BS02 MG ? GO:0002181 ... G1TT27 38172604
    3 8scb:A (2.5) BS03 MG ? GO:0002181 ... G1TT27 38172604
    4 8scb:AA (2.5) BS01 rna ? GO:0000028 ... G1TLT8 38172604
    5 8scb:B (2.5) BS01 rna ? GO:0003723 ... G1TL06 38172604
    6 8scb:B (2.5) BS02 MG ? GO:0003723 ... G1TL06 38172604
    7 8scb:BB (2.5) BS01 rna ? GO:0003735 ... G1SS70 38172604
    8 8scb:C (2.5) BS01 rna ? GO:0003723 ... G1SVW5 38172604
    9 8scb:C (2.5) BS02 rna ? GO:0003723 ... G1SVW5 38172604
    10 8scb:CC (2.5) BS01 rna N/A GO:0003723 ... N/A 38172604
    11 8scb:D (2.5) BS01 rna ? GO:0000027 ... P19949 38172604
    12 8scb:D (2.5) BS02 rna ? GO:0000027 ... P19949 38172604
    13 8scb:DD (2.5) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 38172604
    14 8scb:E (2.5) BS01 rna ? GO:0000027 ... G1SKF7 38172604
    15 8scb:EE (2.5) BS01 rna ? GO:0003723 ... G1TK17 38172604
    16 8scb:EE (2.5) BS02 MG ? GO:0003723 ... G1TK17 38172604
    17 8scb:F (2.5) BS01 rna ? GO:0000463 ... G1TUB1 38172604
    18 8scb:F (2.5) BS02 rna ? GO:0000463 ... G1TUB1 38172604
    19 8scb:FF (2.5) BS01 rna ? GO:0000028 ... G1TFM5 38172604
    20 8scb:FF (2.5) BS02 rna ? GO:0000028 ... G1TFM5 38172604
    21 8scb:G (2.5) BS01 rna ? GO:0000470 ... G1STW0 38172604
    22 8scb:G (2.5) BS02 rna ? GO:0000470 ... G1STW0 38172604
    23 8scb:GG (2.5) BS01 rna ? GO:0000082 ... G1TM55 38172604
    24 8scb:H (2.5) BS01 rna ? GO:0002181 ... G1SWI6 38172604
    25 8scb:HH (2.5) BS01 rna ? GO:0003735 ... G1SVB0 38172604
    26 8scb:I (2.5) BS01 rna ? GO:0000027 ... B7NZQ2 38172604
    27 8scb:I (2.5) BS02 rna ? GO:0000027 ... B7NZQ2 38172604
    28 8scb:I (2.5) BS03 MG ? GO:0000027 ... B7NZQ2 38172604
    29 8scb:II (2.5) BS01 rna ? GO:0000462 ... G1TJW1 38172604
    30 8scb:II (2.5) BS02 rna ? GO:0000462 ... G1TJW1 38172604
    31 8scb:J (2.5) BS01 rna ? GO:0003723 ... G1TUB8 38172604
    32 8scb:J (2.5) BS02 rna ? GO:0003723 ... G1TUB8 38172604
    33 8scb:J (2.5) BS03 rna ? GO:0003723 ... G1TUB8 38172604
    34 8scb:JJ (2.5) BS01 rna ? GO:0003723 ... B7NZS8 38172604
    35 8scb:KK (2.5) BS01 rna ? GO:0003723 ... G1TPV3 38172604
    36 8scb:L (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    37 8scb:L (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    38 8scb:LL (2.5) BS01 rna ? GO:0003735 ... G1TRM4 38172604
    39 8scb:LL (2.5) BS02 MG ? GO:0003735 ... G1TRM4 38172604
    40 8scb:M (2.5) BS01 rna ? GO:0003723 ... G1SZ12 38172604
    41 8scb:MM (2.5) BS01 rna ? GO:0003735 ... G1SFR8 38172604
    42 8scb:N (2.5) BS01 rna ? GO:0002181 ... G1T0C1 38172604
    43 8scb:N (2.5) BS02 rna ? GO:0002181 ... G1T0C1 38172604
    44 8scb:NN (2.5) BS01 rna ? GO:0003735 ... G1SP51 38172604
    45 8scb:O (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    46 8scb:OO (2.5) BS01 rna ? GO:0000028 ... G1T1F0 38172604
    47 8scb:OO (2.5) BS02 MG ? GO:0000028 ... G1T1F0 38172604
    48 8scb:P (2.5) BS01 peptide ? GO:0002181 ... G1SCJ6 38172604
    49 8scb:P (2.5) BS02 rna ? GO:0002181 ... G1SCJ6 38172604
    50 8scb:P (2.5) BS03 rna ? GO:0002181 ... G1SCJ6 38172604
    51 8scb:PP (2.5) BS01 rna ? GO:0000028 ... G1U0Q2 38172604
    52 8scb:Q (2.5) BS01 rna ? GO:0002181 ... G1TFE0 38172604
    53 8scb:QQ (2.5) BS01 rna ? GO:0000462 ... G1SGX4 38172604
    54 8scb:R (2.5) BS01 rna ? GO:0003723 ... G1TJR3 38172604
    55 8scb:R (2.5) BS02 rna ? GO:0003723 ... G1TJR3 38172604
    56 8scb:RR (2.5) BS01 rna ? GO:0003735 ... G1TU13 38172604
    57 8scb:S (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    58 8scb:S (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    59 8scb:SS (2.5) BS01 rna ? GO:0003676 ... G1TPG3 38172604
    60 8scb:T (2.5) BS01 rna ? GO:0003735 ... G1SHQ2 38172604
    61 8scb:T (2.5) BS02 rna ? GO:0003735 ... G1SHQ2 38172604
    62 8scb:TT (2.5) BS01 rna ? GO:0000028 ... G1TN62 38172604
    63 8scb:U (2.5) BS01 rna ? GO:0002181 ... G1TSG1 38172604
    64 8scb:UU (2.5) BS01 rna ? GO:0003723 ... G1SIZ2 38172604
    65 8scb:V (2.5) BS01 rna ? GO:0000122 ... G1T6D1 38172604
    66 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    67 8scb:W (2.5) BS01 rna ? GO:0000027 ... G1SE28 38172604
    68 8scb:WW (2.5) BS01 rna ? GO:0003735 ... G1TG89 38172604
    69 8scb:X (2.5) BS01 rna ? GO:0000027 ... G1SE76 38172604
    70 8scb:X (2.5) BS02 rna ? GO:0000027 ... G1SE76 38172604
    71 8scb:XX (2.5) BS01 rna ? GO:0003735 ... G1SZ47 38172604
    72 8scb:Y (2.5) BS01 rna ? GO:0002181 ... G1SQH0 38172604
    73 8scb:Y (2.5) BS02 rna ? GO:0002181 ... G1SQH0 38172604
    74 8scb:YY (2.5) BS01 rna ? GO:0003735 ... G1T3D8 38172604
    75 8scb:Z (2.5) BS01 rna ? GO:0003735 ... G1TXF6 38172604
    76 8scb:ZZ (2.5) BS01 rna ? GO:0003735 ... G1TDB3 38172604
    77 8scb:a (2.5) BS01 rna ? GO:0003735 ... G1SNY0 38172604
    78 8scb:aa (2.5) BS01 rna ? GO:0003729 ... G1TFE8 38172604
    79 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    80 8scb:b (2.5) BS01 rna ? GO:0002181 ... G1SGR6 38172604
    81 8scb:bb (2.5) BS01 rna ? GO:0000028 ... G1TZ76 38172604
    82 8scb:c (2.5) BS01 rna ? GO:0002181 ... G1TDL2 38172604
    83 8scb:cc (2.5) BS01 rna ? GO:0000028 ... G1TIB4 38172604
    84 8scb:d (2.5) BS01 rna ? GO:0002181 ... G1SHG0 38172604
    85 8scb:dd (2.5) BS01 rna ? GO:0003735 ... G1U7M4 38172604
    86 8scb:dd (2.5) BS02 ZN ? GO:0003735 ... G1U7M4 38172604
    87 8scb:e (2.5) BS01 rna ? GO:0003735 ... G1TUN8 38172604
    88 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    89 8scb:ee (2.5) BS01 rna ? GO:0003735 ... G1T8A2 38172604
    90 8scb:f (2.5) BS01 rna ? GO:0000049 ... G1SF08 38172604
    91 8scb:f (2.5) BS02 MG ? GO:0000049 ... G1SF08 38172604
    92 8scb:ff (2.5) BS01 rna ? GO:0003723 ... G1SK22 38172604
    93 8scb:ff (2.5) BS02 ZN ? GO:0003723 ... G1SK22 38172604
    94 8scb:g (2.5) BS01 rna ? GO:0003735 ... G1TXG5 38172604
    95 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    96 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    97 8scb:gg (2.5) BS01 rna ? GO:0001891 ... G1SJB4 38172604
    98 8scb:h (2.5) BS01 rna ? GO:0000463 ... G1SIT5 38172604
    99 8scb:h (2.5) BS02 rna ? GO:0000463 ... G1SIT5 38172604
    100 8scb:i (2.5) BS01 rna ? GO:0002181 ... G1TTQ5 38172604
    101 8scb:ii (2.5) BS01 rna ? GO:0000184 ... P62495 38172604
    102 8scb:ii (2.5) BS02 rna ? GO:0000184 ... P62495 38172604
    103 8scb:ii (2.5) BS03 rna ? GO:0000184 ... P62495 38172604
    104 8scb:ii (2.5) BS04 rna ? GO:0000184 ... P62495 38172604
    105 8scb:ii (2.5) BS05 ZVM ? GO:0000184 ... P62495 38172604
    106 8scb:j (2.5) BS01 rna ? GO:0003723 ... U3KPD5 38172604
    107 8scb:j (2.5) BS02 rna ? GO:0003723 ... U3KPD5 38172604
    108 8scb:j (2.5) BS03 ZN ? GO:0003723 ... U3KPD5 38172604
    109 8scb:jj (2.5) BS01 rna ? GO:0000054 ... G1SG72 38172604
    110 8scb:jj (2.5) BS02 rna ? GO:0000054 ... G1SG72 38172604
    111 8scb:jj (2.5) BS03 SF4 ? GO:0000054 ... G1SG72 38172604
    112 8scb:jj (2.5) BS04 SF4 ? GO:0000054 ... G1SG72 38172604
    113 8scb:k (2.5) BS01 rna ? GO:0003735 ... G1U001 38172604
    114 8scb:l (2.5) BS01 rna ? GO:0003735 ... G1TTN1 38172604
    115 8scb:l (2.5) BS02 rna ? GO:0003735 ... G1TTN1 38172604
    116 8scb:m (2.5) BS01 rna ? GO:0003735 ... A0A2K5PSA0 38172604
    117 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    118 8scb:o (2.5) BS01 rna ? GO:0003735 ... G1T040 38172604
    119 8scb:o (2.5) BS02 rna ? GO:0003735 ... G1T040 38172604
    120 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    121 8scb:p (2.5) BS01 rna ? GO:0003735 ... G1SY53 38172604
    122 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    123 8scb:r (2.5) BS01 rna ? GO:0003735 ... G1U7L1 38172604
    124 8scb:s (2.5) BS01 rna ? GO:0000027 ... G1SPK4 38172604
    125 8scb:t (2.5) BS01 rna ? GO:0003723 ... G1SMR7 38172604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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