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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8s52:A (2.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    2 8s52:A (2.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    3 8s52:A (2.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    4 8s52:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    5 8s52:A (2.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    6 8s52:A (2.9) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    7 8s52:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    8 8s52:B (2.9) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    9 8s52:B (2.9) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    10 8s52:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    11 8s52:C (2.9) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    12 8s52:E (2.9) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    13 8s52:I (2.9) BS01 ZN ? GO:0000428 ... P60899 38604172
    14 8s52:I (2.9) BS02 ZN ? GO:0000428 ... P60899 38604172
    15 8s52:J (2.9) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    16 8s52:L (2.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    17 8s52:M (2.9) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    18 8s52:M (2.9) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    19 8s52:M (2.9) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    20 8s52:M (2.9) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    21 8s52:O (2.9) BS01 dna ? GO:0000785 ... P20226 38604172
    22 8s52:O (2.9) BS02 dna ? GO:0000785 ... P20226 38604172
    23 8s52:R (2.9) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    24 8s52:W (2.9) BS01 ZN ? GO:0001113 ... P29083 38604172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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