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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8rd8:A4 (2.62) BS01 rna ? GO:0003735 ... A0A0M4TFJ4 38355796
    2 8rd8:Af (2.62) BS01 rna ? GO:0003735 ... A0A0M4T1M3 38355796
    3 8rd8:B (2.62) BS01 rna ? N/A A0A0M3V8U3 38355796
    4 8rd8:B (2.62) BS02 rna ? N/A A0A0M3V8U3 38355796
    5 8rd8:BQ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U618 38355796
    6 8rd8:Ba (2.62) BS01 rna ? GO:0003735 ... A0A0M4TEZ6 38355796
    7 8rd8:C1 (2.62) BS01 rna ? GO:0003735 ... A0A0M3V9E8 38355796
    8 8rd8:CT (2.62) BS01 rna ? GO:0003676 ... A0A0M4T6V9 38355796
    9 8rd8:Cl (2.62) BS01 rna ? GO:0002181 ... A0A0M3V8Q0 38355796
    10 8rd8:D (2.62) BS01 rna ? GO:0005840 ... A0A0M4TFB0 38355796
    11 8rd8:Dm (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE52 38355796
    12 8rd8:E5 (2.62) BS01 rna ? GO:0003723 ... A0A0M3V8J0 38355796
    13 8rd8:E9 (2.62) BS01 rna ? GO:0003735 ... A0A0M4U627 38355796
    14 8rd8:F (2.62) BS01 rna ? GO:0003723 ... A0A0M4T6M9 38355796
    15 8rd8:F7 (2.62) BS01 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    16 8rd8:F7 (2.62) BS02 rna ? GO:0000049 ... A0A0M4T1L5 38355796
    17 8rd8:FG (2.62) BS01 rna ? GO:0003735 ... A0A0M4U628 38355796
    18 8rd8:GR (2.62) BS01 rna ? GO:0002181 ... A0A0M5MKV2 38355796
    19 8rd8:GS (2.62) BS01 rna ? GO:0000028 ... A0A0M3V8N5 38355796
    20 8rd8:H (2.62) BS01 rna ? GO:0003746 ... A0A0M4U5B4 38355796
    21 8rd8:HK (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P8 38355796
    22 8rd8:IX (2.62) BS01 rna ? GO:0003729 ... A0A0M4TBP4 38355796
    23 8rd8:JY (2.62) BS01 rna ? GO:0000049 ... A0A0M4TE68 38355796
    24 8rd8:Je (2.62) BS01 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    25 8rd8:Je (2.62) BS02 rna ? GO:0003735 ... A0A0M5MJS2 38355796
    26 8rd8:KU (2.62) BS01 rna ? GO:0003735 ... A0A0M3V8P6 38355796
    27 8rd8:Kd (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6V1 38355796
    28 8rd8:L6 (2.62) BS01 rna ? GO:0000049 ... A0A0M4U4C3 38355796
    29 8rd8:Lg (2.62) BS01 rna ? GO:0000049 ... A0A0M3V8J3 38355796
    30 8rd8:MB (2.62) BS01 rna ? GO:0003735 ... A0A0M4U611 38355796
    31 8rd8:MM (2.62) BS01 rna ? GO:0000049 ... A0A0M5MJL8 38355796
    32 8rd8:NV (2.62) BS01 rna ? GO:0003735 ... A0A0M4SY21 38355796
    33 8rd8:Nc (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    34 8rd8:Nc (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUJ2 38355796
    35 8rd8:OL (2.62) BS01 rna ? GO:0003735 ... A0A0M4TF29 38355796
    36 8rd8:OL (2.62) BS02 rna ? GO:0003735 ... A0A0M4TF29 38355796
    37 8rd8:Oi (2.62) BS01 rna ? GO:0003735 ... A0A0M4TV08 38355796
    38 8rd8:Oi (2.62) BS02 rna ? GO:0003735 ... A0A0M4TV08 38355796
    39 8rd8:PO (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJR6 38355796
    40 8rd8:Pj (2.62) BS01 rna ? GO:0003735 ... A0A0M4T275 38355796
    41 8rd8:QZ (2.62) BS01 rna ? GO:0003735 ... A0A0M4U401 38355796
    42 8rd8:Qb (2.62) BS01 rna ? GO:0003723 ... A0A0M5TIS3 38355796
    43 8rd8:R3 (2.62) BS01 rna ? GO:0003735 ... A0A0M5MK69 38355796
    44 8rd8:RF (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWS6 38355796
    45 8rd8:SP (2.62) BS01 rna ? GO:0000028 ... A0A0M4TUJ8 38355796
    46 8rd8:Sn (2.62) BS01 rna ? GO:0000027 ... A0A0M5MJH9 38355796
    47 8rd8:TI (2.62) BS01 rna ? GO:0003723 ... A0A0M4TE60 38355796
    48 8rd8:To (2.62) BS01 rna ? GO:0003723 ... A0A0M4T3R2 38355796
    49 8rd8:UC (2.62) BS01 rna ? GO:0003723 ... A0A0M4U726 38355796
    50 8rd8:UC (2.62) BS02 rna ? GO:0003723 ... A0A0M4U726 38355796
    51 8rd8:VH (2.62) BS01 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    52 8rd8:VH (2.62) BS02 rna ? GO:0003735 ... A0A0M4TUE5 38355796
    53 8rd8:WD (2.62) BS01 rna ? GO:0003735 ... A0A0M4T6Y7 38355796
    54 8rd8:XE (2.62) BS01 rna ? GO:0003735 ... A0A0M4TBX9 38355796
    55 8rd8:YW (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    56 8rd8:YW (2.62) BS02 rna ? GO:0003735 ... A0A0M4SWR7 38355796
    57 8rd8:aA (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWQ6 38355796
    58 8rd8:bk (2.62) BS01 rna ? GO:0003735 ... A0A0M4SWV1 38355796
    59 8rd8:dh (2.62) BS01 rna ? GO:0003735 ... A0A0M4U4I0 38355796
    60 8rd8:ep (2.62) BS01 rna ? GO:0003735 ... A0A0M4U3Z5 38355796
    61 8rd8:fJ (2.62) BS01 rna ? GO:0003735 ... A0A0M4SX87 38355796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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