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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8r57:F (2.55) BS01 rna ? GO:0003723 ... W5I1R7 38139282
    2 8r57:K (2.55) BS01 rna ? GO:0003723 ... W5AUH7 38139282
    3 8r57:M (2.55) BS01 rna ? GO:0003735 ... W5FEZ3 38139282
    4 8r57:P (2.55) BS01 rna ? GO:0000028 ... W5D067 38139282
    5 8r57:P (2.55) BS02 MG ? GO:0000028 ... W5D067 38139282
    6 8r57:Q (2.55) BS01 rna ? GO:0000462 ... W5DS33 38139282
    7 8r57:R (2.55) BS01 rna ? GO:0000028 ... A0A3B6LV48 38139282
    8 8r57:S (2.55) BS01 rna ? GO:0003676 ... Q8L806 38139282
    9 8r57:T (2.55) BS01 rna ? GO:0003735 ... W5FWF5 38139282
    10 8r57:U (2.55) BS01 rna ? GO:0003735 ... U5HTD8 38139282
    11 8r57:Z (2.55) BS01 rna ? GO:0003735 ... W5EP45 38139282
    12 8r57:c (2.55) BS01 rna ? GO:0000028 ... W5E8X2 38139282
    13 8r57:d (2.55) BS01 rna ? GO:0002181 ... Q5I7K3 38139282
    14 8r57:d (2.55) BS02 ZN ? GO:0002181 ... Q5I7K3 38139282
    15 8r57:f (2.55) BS01 rna ? GO:0003729 ... W5A9E1 38139282
    16 8r57:f (2.55) BS02 ZN ? GO:0003729 ... W5A9E1 38139282
    17 8r57:g (2.55) BS01 rna ? GO:0005080 ... W5D4F5 38139282
    18 8r57:h (2.55) BS01 rna ? GO:0003735 ... A0A3B5XY60 38139282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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