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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qzs:21 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    2 8qzs:22 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    3 8qzs:23 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    4 8qzs:2B (4.1) BS01 rna ? GO:0000398 ... P08579 38778104
    5 8qzs:2b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    6 8qzs:2e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    7 8qzs:2f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    8 8qzs:2g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    9 8qzs:42 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    10 8qzs:43 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    11 8qzs:4e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    12 8qzs:4f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    13 8qzs:4g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    14 8qzs:51 (4.1) BS01 rna ? GO:0000243 ... P62314 38778104
    15 8qzs:52 (4.1) BS01 rna ? GO:0000245 ... P62316 38778104
    16 8qzs:53 (4.1) BS01 rna ? GO:0000243 ... P62318 38778104
    17 8qzs:5b (4.1) BS01 rna ? GO:0000387 ... P14678 38778104
    18 8qzs:5e (4.1) BS01 rna ? GO:0000245 ... P62304 38778104
    19 8qzs:5f (4.1) BS01 rna ? GO:0000387 ... P62306 38778104
    20 8qzs:5g (4.1) BS01 rna ? GO:0000245 ... P62308 38778104
    21 8qzs:7 (4.1) BS01 rna ? GO:0000389 ... Q15459 38778104
    22 8qzs:A (4.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    23 8qzs:A (4.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    24 8qzs:A (4.1) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    25 8qzs:B (4.1) BS01 rna 3.6.4.13 GO:0000354 ... O75643 38778104
    26 8qzs:B1 (4.1) BS01 rna ? GO:0000245 ... O75533 38778104
    27 8qzs:B1 (4.1) BS02 rna ? GO:0000245 ... O75533 38778104
    28 8qzs:B6 (4.1) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    29 8qzs:D (4.1) BS01 rna ? GO:0000245 ... P83876 38778104
    30 8qzs:D (4.1) BS02 rna ? GO:0000245 ... P83876 38778104
    31 8qzs:F (4.1) BS01 rna ? GO:0000375 ... O43172 38778104
    32 8qzs:J (4.1) BS01 rna ? GO:0000244 ... O43395 38778104
    33 8qzs:J (4.1) BS02 rna ? GO:0000244 ... O43395 38778104
    34 8qzs:L (4.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    35 8qzs:L (4.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    36 8qzs:M (4.1) BS01 rna ? GO:0000398 ... P55769 38778104
    37 8qzs:N (4.1) BS01 rna ? GO:0000244 ... O94906 38778104
    38 8qzs:X (4.1) BS01 rna ? GO:0000398 ... O75554 38778104
    39 8qzs:X (4.1) BS02 rna ? GO:0000398 ... O75554 38778104
    40 8qzs:r (4.1) BS01 rna ? GO:0000398 ... Q96NC0 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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