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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8qxd:21 (9.6) BS01 rna ? GO:0000243 ... P62314 38778104
    2 8qxd:22 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    3 8qxd:23 (9.6) BS01 rna ? GO:0000243 ... P62318 38778104
    4 8qxd:2B (9.6) BS01 rna ? GO:0000398 ... P08579 38778104
    5 8qxd:2e (9.6) BS01 rna ? GO:0000245 ... P62304 38778104
    6 8qxd:2f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    7 8qxd:2g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    8 8qxd:41 (9.6) BS01 rna ? GO:0000243 ... P62314 38778104
    9 8qxd:42 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    10 8qxd:42 (9.6) BS02 peptide ? GO:0000245 ... P62316 38778104
    11 8qxd:43 (9.6) BS01 rna ? GO:0000243 ... P62318 38778104
    12 8qxd:4b (9.6) BS01 rna ? N/A P14678 38778104
    13 8qxd:4e (9.6) BS01 rna ? GO:0000245 ... P62304 38778104
    14 8qxd:4f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    15 8qxd:4g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    16 8qxd:51 (9.6) BS01 rna ? N/A P62314 38778104
    17 8qxd:52 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    18 8qxd:5b (9.6) BS01 rna ? N/A P14678 38778104
    19 8qxd:5f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    20 8qxd:5g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    21 8qxd:63 (9.6) BS01 rna ? GO:0000398 ... P62310 38778104
    22 8qxd:68 (9.6) BS01 rna ? GO:0000398 ... O95777 38778104
    23 8qxd:8 (9.6) BS01 rna ? GO:0000245 ... Q15428 38778104
    24 8qxd:A (9.6) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    25 8qxd:A (9.6) BS02 peptide ? GO:0000244 ... Q6P2Q9 38778104
    26 8qxd:B1 (9.6) BS01 rna ? GO:0000245 ... O75533 38778104
    27 8qxd:B1 (9.6) BS02 rna ? GO:0000245 ... O75533 38778104
    28 8qxd:B2 (9.6) BS01 rna ? GO:0000398 ... Q13435 38778104
    29 8qxd:B6 (9.6) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    30 8qxd:D (9.6) BS01 rna ? GO:0000245 ... P83876 38778104
    31 8qxd:J (9.6) BS01 rna ? GO:0000244 ... O43395 38778104
    32 8qxd:L (9.6) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    33 8qxd:L (9.6) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    34 8qxd:M (9.6) BS01 rna ? GO:0000398 ... P55769 38778104
    35 8qxd:M (9.6) BS02 rna ? GO:0000398 ... P55769 38778104
    36 8qxd:R (9.6) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    37 8qxd:R (9.6) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    38 8qxd:S (9.6) BS01 rna ? GO:0000387 ... O43290 38778104
    39 8qxd:S (9.6) BS02 peptide ? GO:0000387 ... O43290 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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