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BioLiP
Download all results in tab-seperated text for 128 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8q87:A (2.4) BS01 rna N/A N/A Q90705 N/A
    2 8q87:A (2.4) BS02 rna N/A N/A Q90705 N/A
    3 8q87:A (2.4) BS03 GDP N/A N/A Q90705 N/A
    4 8q87:AA (2.4) BS01 rna N/A N/A A0A3Q2TV39 N/A
    5 8q87:AB (2.4) BS01 rna N/A N/A A0A3Q2U825 N/A
    6 8q87:AC (2.4) BS01 rna N/A N/A P79781 N/A
    7 8q87:AC (2.4) BS02 ZN N/A N/A P79781 N/A
    8 8q87:AD (2.4) BS01 rna N/A N/A N/A N/A
    9 8q87:AE (2.4) BS01 rna N/A N/A Q5ZM66 N/A
    10 8q87:AE (2.4) BS02 ZN N/A N/A Q5ZM66 N/A
    11 8q87:AF (2.4) BS01 rna N/A N/A P63247 N/A
    12 8q87:AG (2.4) BS01 rna N/A N/A A0A8V0Z8V3 N/A
    13 8q87:AG (2.4) BS02 MG N/A N/A A0A8V0Z8V3 N/A
    14 8q87:AG (2.4) BS03 ZN N/A N/A A0A8V0Z8V3 N/A
    15 8q87:AZ (2.4) BS01 rna N/A N/A P50890 N/A
    16 8q87:Aa (2.4) BS01 rna N/A N/A N/A N/A
    17 8q87:Ab (2.4) BS01 rna N/A N/A A0A8V0Z891 N/A
    18 8q87:Ac (2.4) BS01 rna N/A N/A F1NPA9 N/A
    19 8q87:Ad (2.4) BS01 rna N/A N/A P47836 N/A
    20 8q87:Ae (2.4) BS01 rna N/A N/A G1TFM5 N/A
    21 8q87:Af (2.4) BS01 rna N/A N/A P47838 N/A
    22 8q87:Ag (2.4) BS01 rna N/A N/A F1NN16 N/A
    23 8q87:Ah (2.4) BS01 rna N/A N/A F1NB02 N/A
    24 8q87:Ah (2.4) BS02 rna N/A N/A F1NB02 N/A
    25 8q87:Ai (2.4) BS01 rna N/A N/A B7NZS8 N/A
    26 8q87:Aj (2.4) BS01 rna N/A N/A E1C4N0 N/A
    27 8q87:Ak (2.4) BS01 rna N/A N/A Q98TH5 N/A
    28 8q87:Ak (2.4) BS02 MG N/A N/A Q98TH5 N/A
    29 8q87:Al (2.4) BS01 rna N/A N/A P84175 N/A
    30 8q87:Am (2.4) BS01 rna N/A N/A Q6ITC7 N/A
    31 8q87:Am (2.4) BS02 rna N/A N/A Q6ITC7 N/A
    32 8q87:An (2.4) BS01 rna N/A N/A Q5ZHW8 N/A
    33 8q87:Ao (2.4) BS01 rna N/A N/A P62846 N/A
    34 8q87:Ao (2.4) BS02 rna N/A N/A P62846 N/A
    35 8q87:Ap (2.4) BS01 rna N/A N/A R4GGJ0 N/A
    36 8q87:Aq (2.4) BS01 rna N/A N/A P08636 N/A
    37 8q87:Ar (2.4) BS01 rna N/A N/A G1TPG3 N/A
    38 8q87:As (2.4) BS01 rna N/A N/A N/A N/A
    39 8q87:At (2.4) BS01 rna N/A N/A F1NH93 N/A
    40 8q87:At (2.4) BS02 MG N/A N/A F1NH93 N/A
    41 8q87:Av (2.4) BS01 rna N/A N/A A0A3Q3A7P6 N/A
    42 8q87:Aw (2.4) BS01 rna N/A N/A N/A N/A
    43 8q87:Ax (2.4) BS01 rna N/A N/A F1NF89 N/A
    44 8q87:Ay (2.4) BS01 rna N/A N/A A0A8V1A7V4 N/A
    45 8q87:BA (2.4) BS01 rna N/A N/A F1NIX0 N/A
    46 8q87:BA (2.4) BS02 MG N/A N/A F1NIX0 N/A
    47 8q87:BA (2.4) BS03 MG N/A N/A F1NIX0 N/A
    48 8q87:BB (2.4) BS01 rna N/A N/A Q5ZJZ2 N/A
    49 8q87:BB (2.4) BS02 MG N/A N/A Q5ZJZ2 N/A
    50 8q87:BB (2.4) BS03 MG N/A N/A Q5ZJZ2 N/A
    51 8q87:BC (2.4) BS01 rna N/A N/A Q5ZII1 N/A
    52 8q87:BC (2.4) BS02 rna N/A N/A Q5ZII1 N/A
    53 8q87:BD (2.4) BS01 rna N/A N/A P22451 N/A
    54 8q87:BD (2.4) BS02 rna N/A N/A P22451 N/A
    55 8q87:BE (2.4) BS01 rna N/A N/A Q8UWG7 N/A
    56 8q87:BF (2.4) BS01 rna N/A N/A Q5ZJ56 N/A
    57 8q87:BF (2.4) BS02 rna N/A N/A Q5ZJ56 N/A
    58 8q87:BG (2.4) BS01 rna N/A N/A P32429 N/A
    59 8q87:BG (2.4) BS02 rna N/A N/A P32429 N/A
    60 8q87:BH (2.4) BS01 rna N/A N/A A0A1D5NVI1 N/A
    61 8q87:BH (2.4) BS02 MG N/A N/A A0A1D5NVI1 N/A
    62 8q87:BI (2.4) BS01 rna N/A N/A Q08200 N/A
    63 8q87:BI (2.4) BS02 rna N/A N/A Q08200 N/A
    64 8q87:BI (2.4) BS03 MG N/A N/A Q08200 N/A
    65 8q87:BJ (2.4) BS01 rna N/A N/A A0A1D5P3B1 N/A
    66 8q87:BJ (2.4) BS02 rna N/A N/A A0A1D5P3B1 N/A
    67 8q87:BL (2.4) BS01 rna N/A N/A P41125 N/A
    68 8q87:BL (2.4) BS02 rna N/A N/A P41125 N/A
    69 8q87:BM (2.4) BS01 rna N/A N/A Q98TF9 N/A
    70 8q87:BN (2.4) BS01 rna N/A N/A F1NQG5 N/A
    71 8q87:BN (2.4) BS02 rna N/A N/A F1NQG5 N/A
    72 8q87:BN (2.4) BS03 MG N/A N/A F1NQG5 N/A
    73 8q87:BO (2.4) BS01 rna N/A N/A N/A N/A
    74 8q87:BP (2.4) BS01 rna N/A N/A A0A1D5PR40 N/A
    75 8q87:BP (2.4) BS02 rna N/A N/A A0A1D5PR40 N/A
    76 8q87:BP (2.4) BS03 MG N/A N/A A0A1D5PR40 N/A
    77 8q87:BQ (2.4) BS01 rna N/A N/A N/A N/A
    78 8q87:BR (2.4) BS01 rna N/A N/A Q5ZKK8 N/A
    79 8q87:BR (2.4) BS02 rna N/A N/A Q5ZKK8 N/A
    80 8q87:BS (2.4) BS01 rna N/A N/A N/A N/A
    81 8q87:BS (2.4) BS02 rna N/A N/A N/A N/A
    82 8q87:BT (2.4) BS01 rna N/A N/A R4GIQ2 N/A
    83 8q87:BT (2.4) BS02 rna N/A N/A R4GIQ2 N/A
    84 8q87:BU (2.4) BS01 rna N/A N/A Q98TF8 N/A
    85 8q87:BV (2.4) BS01 rna N/A N/A N/A N/A
    86 8q87:BW (2.4) BS01 rna N/A N/A A0A8V0XRE7 N/A
    87 8q87:BX (2.4) BS01 rna N/A N/A N/A N/A
    88 8q87:BX (2.4) BS02 rna N/A N/A N/A N/A
    89 8q87:BY (2.4) BS01 rna N/A N/A F2Z4K6 N/A
    90 8q87:BY (2.4) BS02 rna N/A N/A F2Z4K6 N/A
    91 8q87:BZ (2.4) BS01 rna N/A N/A P61355 N/A
    92 8q87:Ba (2.4) BS01 rna N/A N/A N/A N/A
    93 8q87:Bb (2.4) BS01 rna N/A N/A A0A1L1RNZ2 N/A
    94 8q87:Bb (2.4) BS02 MG N/A N/A A0A1L1RNZ2 N/A
    95 8q87:Bb (2.4) BS03 MG N/A N/A A0A1L1RNZ2 N/A
    96 8q87:Bc (2.4) BS01 rna N/A N/A P67883 N/A
    97 8q87:Bd (2.4) BS01 rna N/A N/A A0A1L1RT94 N/A
    98 8q87:Be (2.4) BS01 rna N/A N/A E1BVB1 N/A
    99 8q87:Be (2.4) BS02 MG N/A N/A E1BVB1 N/A
    100 8q87:Be (2.4) BS03 MG N/A N/A E1BVB1 N/A
    101 8q87:Bf (2.4) BS01 rna N/A N/A N/A N/A
    102 8q87:Bf (2.4) BS02 MG N/A N/A N/A N/A
    103 8q87:Bg (2.4) BS01 rna N/A N/A A0A1L1S0X5 N/A
    104 8q87:Bg (2.4) BS02 MG N/A N/A A0A1L1S0X5 N/A
    105 8q87:Bg (2.4) BS03 ZN N/A N/A A0A1L1S0X5 N/A
    106 8q87:Bh (2.4) BS01 rna N/A N/A Q98TF7 N/A
    107 8q87:Bh (2.4) BS02 rna N/A N/A Q98TF7 N/A
    108 8q87:Bi (2.4) BS01 rna N/A N/A Q98TF6 N/A
    109 8q87:Bj (2.4) BS01 rna N/A N/A E1C810 N/A
    110 8q87:Bj (2.4) BS02 rna N/A N/A E1C810 N/A
    111 8q87:Bj (2.4) BS03 ZN N/A N/A E1C810 N/A
    112 8q87:Bk (2.4) BS01 rna N/A N/A E1BU66 N/A
    113 8q87:Bl (2.4) BS01 rna N/A N/A Q98TF5 N/A
    114 8q87:Bl (2.4) BS02 rna N/A N/A Q98TF5 N/A
    115 8q87:Bm (2.4) BS01 rna N/A N/A O42388 N/A
    116 8q87:Bm (2.4) BS02 ZN N/A N/A O42388 N/A
    117 8q87:Bo (2.4) BS01 rna N/A N/A A0A8V0YUB1 N/A
    118 8q87:Bo (2.4) BS02 rna N/A N/A A0A8V0YUB1 N/A
    119 8q87:Bo (2.4) BS03 MG N/A N/A A0A8V0YUB1 N/A
    120 8q87:Bo (2.4) BS04 ZN N/A N/A A0A8V0YUB1 N/A
    121 8q87:Bp (2.4) BS01 rna N/A N/A P32046 N/A
    122 8q87:Bp (2.4) BS02 ZN N/A N/A P32046 N/A
    123 8q87:Br (2.4) BS01 rna N/A N/A Q5F346 N/A
    124 8q87:Bs (2.4) BS01 rna N/A N/A P47826 N/A
    125 8q87:Bt (2.4) BS01 rna N/A N/A E1BTG1 N/A
    126 8q87:Bv (2.4) BS01 rna N/A N/A F6SU35 N/A
    127 8q87:Bv (2.4) BS02 rna N/A N/A F6SU35 N/A
    128 8q87:S (2.4) BS01 rna N/A N/A A0A8V0ZUK5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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