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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8q7q:A (3.2) BS01 rna ? GO:0000244 ... Q6P2Q9 38467876
    2 8q7q:A (3.2) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467876
    3 8q7q:A (3.2) BS03 peptide ? GO:0000244 ... Q6P2Q9 38467876
    4 8q7q:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467876
    5 8q7q:D (3.2) BS01 rna ? GO:0000375 ... Q96DI7 38467876
    6 8q7q:a (3.2) BS01 rna ? GO:0000243 ... P62314 38467876
    7 8q7q:b (3.2) BS01 rna ? GO:0000387 ... P14678 38467876
    8 8q7q:c (3.2) BS01 rna ? GO:0000245 ... P62316 38467876
    9 8q7q:d (3.2) BS01 rna ? GO:0000243 ... P62318 38467876
    10 8q7q:e (3.2) BS01 rna ? GO:0000245 ... P62304 38467876
    11 8q7q:f (3.2) BS01 rna ? GO:0000387 ... P62306 38467876
    12 8q7q:g (3.2) BS01 rna ? GO:0000245 ... P62308 38467876
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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