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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8q5i:0 (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    2 8q5i:0 (2.45) BS02 rna ? GO:0003735 ... A0A8H6BZJ3 N/A
    3 8q5i:2 (2.45) BS01 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    4 8q5i:2 (2.45) BS02 rna ? GO:0003735 ... A0A8H6F1C8 N/A
    5 8q5i:5 (2.45) BS01 rna ? GO:0002181 ... A0A1D8PM41 N/A
    6 8q5i:6 (2.45) BS01 rna ? GO:0003735 ... A0A8H6C444 N/A
    7 8q5i:7 (2.45) BS01 rna ? GO:0002181 ... A0A8H6C4U1 N/A
    8 8q5i:8 (2.45) BS01 rna ? GO:0000027 ... A0A8H6F6A1 N/A
    9 8q5i:8 (2.45) BS02 rna ? GO:0000027 ... A0A8H6F6A1 N/A
    10 8q5i:9 (2.45) BS01 rna ? GO:0002181 ... A0A8H6F3X2 N/A
    11 8q5i:9 (2.45) BS02 rna ? GO:0002181 ... A0A8H6F3X2 N/A
    12 8q5i:AA (2.45) BS01 rna ? GO:0003735 ... Q9P843 N/A
    13 8q5i:AB (2.45) BS01 rna ? GO:0003735 ... A0A8H6BVY8 N/A
    14 8q5i:AC (2.45) BS01 rna ? GO:0002181 ... A0A8H6F0G8 N/A
    15 8q5i:AD (2.45) BS01 rna ? GO:0003723 ... A0A1D8PM75 N/A
    16 8q5i:AE (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1M1 N/A
    17 8q5i:AF (2.45) BS01 rna ? GO:0003735 ... O94008 N/A
    18 8q5i:AG (2.45) BS01 rna ? GO:0002181 ... A0A8H6BW57 N/A
    19 8q5i:AH (2.45) BS01 rna ? GO:0003735 ... A0A8H6F171 N/A
    20 8q5i:AH (2.45) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    21 8q5i:AI (2.45) BS01 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    22 8q5i:AI (2.45) BS02 rna ? GO:0000463 ... A0A8H6F6B7 N/A
    23 8q5i:AJ (2.45) BS01 rna ? GO:0002181 ... P47834 N/A
    24 8q5i:AK (2.45) BS01 rna ? GO:0003723 ... A0A1D8PF45 N/A
    25 8q5i:AK (2.45) BS02 rna ? GO:0003723 ... A0A1D8PF45 N/A
    26 8q5i:AK (2.45) BS03 K16 ? GO:0003723 ... A0A1D8PF45 N/A
    27 8q5i:AK (2.45) BS04 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    28 8q5i:AL (2.45) BS01 rna ? GO:0003735 ... A0A1D8PG16 N/A
    29 8q5i:AM (2.45) BS01 rna ? GO:0003735 ... Q96W55 N/A
    30 8q5i:AM (2.45) BS02 rna ? GO:0003735 ... Q96W55 N/A
    31 8q5i:AN (2.45) BS01 rna ? GO:0003735 ... A0A1D8PL68 N/A
    32 8q5i:AN (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    33 8q5i:AP (2.45) BS01 rna ? GO:0003735 ... A0A8H6BR69 N/A
    34 8q5i:AP (2.45) BS02 rna ? GO:0003735 ... A0A8H6BR69 N/A
    35 8q5i:AP (2.45) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    36 8q5i:AP (2.45) BS04 MG ? GO:0003735 ... A0A8H6BR69 N/A
    37 8q5i:AQ (2.45) BS01 rna ? GO:0003735 ... A0A1D8PP14 N/A
    38 8q5i:AQ (2.45) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    39 8q5i:B (2.45) BS01 rna ? GO:0000028 ... A0A8H6C395 N/A
    40 8q5i:C (2.45) BS01 rna ? GO:0003735 ... A0A8H6C387 N/A
    41 8q5i:C (2.45) BS02 rna ? GO:0003735 ... A0A8H6C387 N/A
    42 8q5i:D (2.45) BS01 rna ? GO:0003723 ... A0A8H6BZ90 N/A
    43 8q5i:E (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYS1 N/A
    44 8q5i:F (2.45) BS01 rna ? GO:0003723 ... A0A1D8PCI6 N/A
    45 8q5i:G (2.45) BS01 rna ? GO:0000028 ... A0A8H6BS29 N/A
    46 8q5i:H (2.45) BS01 rna ? GO:0003735 ... A0A8H6BZ37 N/A
    47 8q5i:I (2.45) BS01 rna ? GO:0003735 ... A0A8H6C655 N/A
    48 8q5i:J (2.45) BS01 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    49 8q5i:J (2.45) BS02 rna ? GO:0000462 ... A0A8H6F0S0 N/A
    50 8q5i:K (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1X2 N/A
    51 8q5i:L (2.45) BS01 rna ? GO:0003723 ... A0A8H6BWQ8 N/A
    52 8q5i:M (2.45) BS01 rna ? GO:0003735 ... A0A1D8PN83 N/A
    53 8q5i:M (2.45) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    54 8q5i:O (2.45) BS01 rna ? GO:0003735 ... A0A8H6F4G0 N/A
    55 8q5i:P (2.45) BS01 rna ? GO:0000028 ... A0A8H6F0V4 N/A
    56 8q5i:Q (2.45) BS01 rna ? GO:0000028 ... A0A1D8PK22 N/A
    57 8q5i:R (2.45) BS01 rna ? GO:0000462 ... O94017 N/A
    58 8q5i:S (2.45) BS01 rna ? GO:0003735 ... A0A8H6BTR7 N/A
    59 8q5i:T (2.45) BS01 rna ? GO:0003676 ... A0A8H6F3Y8 N/A
    60 8q5i:U (2.45) BS01 rna ? GO:0000028 ... A0A8H6C5L4 N/A
    61 8q5i:V (2.45) BS01 rna ? GO:0003723 ... A0A8H6BYJ9 N/A
    62 8q5i:W (2.45) BS01 rna ? GO:0000447 ... Q9P844 N/A
    63 8q5i:X (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0N4 N/A
    64 8q5i:X (2.45) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    65 8q5i:Y (2.45) BS01 rna ? GO:0003735 ... A0A8H6F0V0 N/A
    66 8q5i:Z (2.45) BS01 rna ? GO:0003735 ... A0A8H6C3K1 N/A
    67 8q5i:b (2.45) BS01 rna ? GO:0003729 ... A0A8H6BTS1 N/A
    68 8q5i:c (2.45) BS01 rna ? GO:0000028 ... A0A8H6BWE6 N/A
    69 8q5i:d (2.45) BS01 rna ? GO:0000028 ... A0A8H6C0A5 N/A
    70 8q5i:e (2.45) BS01 rna ? GO:0002181 ... A0A1D8PTR4 N/A
    71 8q5i:e (2.45) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    72 8q5i:f (2.45) BS01 rna ? GO:0003735 ... A0A1D8PSK2 N/A
    73 8q5i:j (2.45) BS01 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    74 8q5i:j (2.45) BS02 rna ? GO:0002181 ... A0A8H6F1X9 N/A
    75 8q5i:j (2.45) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    76 8q5i:k (2.45) BS01 rna ? GO:0000027 ... Q59LS1 N/A
    77 8q5i:l (2.45) BS01 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    78 8q5i:l (2.45) BS02 rna ? GO:0003723 ... A0A8H6F4H4 N/A
    79 8q5i:m (2.45) BS01 rna ? GO:0000027 ... Q5AGZ7 N/A
    80 8q5i:m (2.45) BS02 rna ? GO:0000027 ... Q5AGZ7 N/A
    81 8q5i:n (2.45) BS01 rna ? GO:0000027 ... Q9P834 N/A
    82 8q5i:o (2.45) BS01 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    83 8q5i:o (2.45) BS02 rna ? GO:0000463 ... A0A8H6BVN2 N/A
    84 8q5i:p (2.45) BS01 rna ? GO:0000470 ... A0A8H6C337 N/A
    85 8q5i:p (2.45) BS02 rna ? GO:0000470 ... A0A8H6C337 N/A
    86 8q5i:q (2.45) BS01 rna ? GO:0002181 ... A0A8H6C3N3 N/A
    87 8q5i:r (2.45) BS01 rna ? GO:0000027 ... Q5AIB8 N/A
    88 8q5i:r (2.45) BS02 rna ? GO:0000027 ... Q5AIB8 N/A
    89 8q5i:s (2.45) BS01 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    90 8q5i:s (2.45) BS02 rna ? GO:0003723 ... A0A8H6F1S5 N/A
    91 8q5i:t (2.45) BS01 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    92 8q5i:t (2.45) BS02 rna ? GO:0003723 ... A0A8H6F5V7 N/A
    93 8q5i:u (2.45) BS01 rna ? GO:0003723 ... A0A8H6F332 N/A
    94 8q5i:v (2.45) BS01 rna ? GO:0002181 ... Q5A6R1 N/A
    95 8q5i:v (2.45) BS02 rna ? GO:0002181 ... Q5A6R1 N/A
    96 8q5i:w (2.45) BS01 rna ? GO:0003729 ... A0A8H6BZ56 N/A
    97 8q5i:x (2.45) BS01 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    98 8q5i:x (2.45) BS02 rna ? GO:0002181 ... A0A8H6BUG0 N/A
    99 8q5i:x (2.45) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    100 8q5i:y (2.45) BS01 rna ? GO:0003723 ... A0A8H6C4Y1 N/A
    101 8q5i:z (2.45) BS01 rna ? GO:0003723 ... A0A1D8PK40 N/A
    102 8q5i:z (2.45) BS02 rna ? GO:0003723 ... A0A1D8PK40 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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