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BioLiP
Download all results in tab-seperated text for 85 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pvk:CB (2.55) BS01 rna ? GO:0000470 ... G0S7X0 37921038
    2 8pvk:CF (2.55) BS01 rna ? GO:0000027 ... G0S616 37921038
    3 8pvk:CH (2.55) BS01 rna ? GO:0003723 ... G0S8F1 37921038
    4 8pvk:CH (2.55) BS02 rna ? GO:0003723 ... G0S8F1 37921038
    5 8pvk:CH (2.55) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    6 8pvk:CH (2.55) BS04 MG ? GO:0003723 ... G0S8F1 37921038
    7 8pvk:CI (2.55) BS01 rna ? GO:0000463 ... G0S1H0 37921038
    8 8pvk:CJ (2.55) BS01 rna ? GO:0000463 ... G0SHX6 37921038
    9 8pvk:CJ (2.55) BS02 rna ? GO:0000463 ... G0SHX6 37921038
    10 8pvk:CK (2.55) BS01 rna ? GO:0000460 ... G0S081 37921038
    11 8pvk:CL (2.55) BS01 rna ? GO:0005525 ... G0SEW3 37921038
    12 8pvk:CM (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    13 8pvk:CM (2.55) BS02 rna ? GO:0000463 ... G0SFL0 37921038
    14 8pvk:CN (2.55) BS01 rna ? GO:0000054 ... G0S683 37921038
    15 8pvk:CO (2.55) BS01 rna ? GO:0030687 ... G0SHK0 37921038
    16 8pvk:CQ (2.55) BS01 rna ? GO:0005730 ... G0S497 37921038
    17 8pvk:CQ (2.55) BS02 ZN ? GO:0005730 ... G0S497 37921038
    18 8pvk:Cb (2.55) BS01 rna ? GO:0003676 ... G0SB32 37921038
    19 8pvk:Cb (2.55) BS02 ZN ? GO:0003676 ... G0SB32 37921038
    20 8pvk:Cd (2.55) BS01 rna ? GO:0005525 ... G0SBX1 37921038
    21 8pvk:Cd (2.55) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    22 8pvk:Cd (2.55) BS03 MG ? GO:0005525 ... G0SBX1 37921038
    23 8pvk:Cd (2.55) BS04 MG ? GO:0005525 ... G0SBX1 37921038
    24 8pvk:Ce (2.55) BS01 rna ? GO:0000027 ... G0S495 37921038
    25 8pvk:Ce (2.55) BS02 rna ? GO:0000027 ... G0S495 37921038
    26 8pvk:Ce (2.55) BS03 rna ? GO:0000027 ... G0S495 37921038
    27 8pvk:Cf (2.55) BS01 rna ? GO:0000027 ... G0SF80 37921038
    28 8pvk:Cf (2.55) BS02 rna ? GO:0000027 ... G0SF80 37921038
    29 8pvk:Cg (2.55) BS01 rna ? GO:0000447 ... G0SCH6 37921038
    30 8pvk:Cz (2.55) BS01 rna ? GO:0005634 ... G0SCP3 37921038
    31 8pvk:Cz (2.55) BS02 rna ? GO:0005634 ... G0SCP3 37921038
    32 8pvk:LA (2.55) BS01 rna ? GO:0002181 ... G0S4P8 37921038
    33 8pvk:LB (2.55) BS01 rna ? GO:0003723 ... G0RXW1 37921038
    34 8pvk:LC (2.55) BS01 rna ? GO:0003723 ... G0SFC3 37921038
    35 8pvk:LC (2.55) BS02 rna ? GO:0003723 ... G0SFC3 37921038
    36 8pvk:LD (2.55) BS01 rna ? GO:0000027 ... G0SEG2 37921038
    37 8pvk:LD (2.55) BS02 rna ? GO:0000027 ... G0SEG2 37921038
    38 8pvk:LE (2.55) BS01 rna ? GO:0000027 ... G0S0D6 37921038
    39 8pvk:LF (2.55) BS01 rna ? GO:0000463 ... G0SFL0 37921038
    40 8pvk:LG (2.55) BS01 rna ? GO:0000470 ... G0SAJ9 37921038
    41 8pvk:LG (2.55) BS02 rna ? GO:0000470 ... G0SAJ9 37921038
    42 8pvk:LG (2.55) BS03 rna ? GO:0000470 ... G0SAJ9 37921038
    43 8pvk:LH (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    44 8pvk:LJ (2.55) BS01 rna ? GO:0003723 ... G0SHQ2 37921038
    45 8pvk:LJ (2.55) BS02 rna ? GO:0003723 ... G0SHQ2 37921038
    46 8pvk:LK (2.55) BS01 rna ? GO:0003735 ... G0SGH8 37921038
    47 8pvk:LL (2.55) BS01 rna ? GO:0003723 ... G0S992 37921038
    48 8pvk:LL (2.55) BS02 rna ? GO:0003723 ... G0S992 37921038
    49 8pvk:LM (2.55) BS01 rna ? GO:0003723 ... G0S1R0 37921038
    50 8pvk:LN (2.55) BS01 rna ? GO:0002181 ... G0RZ88 37921038
    51 8pvk:LN (2.55) BS02 rna ? GO:0002181 ... G0RZ88 37921038
    52 8pvk:LO (2.55) BS01 rna ? GO:0003729 ... G0SH61 37921038
    53 8pvk:LP (2.55) BS01 rna ? GO:0002181 ... G0SGY1 37921038
    54 8pvk:LP (2.55) BS02 rna ? GO:0002181 ... G0SGY1 37921038
    55 8pvk:LQ (2.55) BS01 rna ? GO:0003723 ... G0S9B5 37921038
    56 8pvk:LR (2.55) BS01 rna ? GO:0003735 ... G0S9T3 37921038
    57 8pvk:LS (2.55) BS01 rna ? GO:0003735 ... G0SCE2 37921038
    58 8pvk:LT (2.55) BS01 rna ? GO:0003735 ... G0S0Z3 37921038
    59 8pvk:LU (2.55) BS01 rna ? GO:0002181 ... G0SDS8 37921038
    60 8pvk:LV (2.55) BS01 rna ? GO:0003735 ... G0SI44 37921038
    61 8pvk:LX (2.55) BS01 rna ? GO:0000027 ... G0S507 37921038
    62 8pvk:LX (2.55) BS02 rna ? GO:0000027 ... G0S507 37921038
    63 8pvk:LY (2.55) BS01 rna ? GO:0002181 ... G0RYN9 37921038
    64 8pvk:LY (2.55) BS02 rna ? GO:0002181 ... G0RYN9 37921038
    65 8pvk:LZ (2.55) BS01 rna ? GO:0003735 ... G0RZE9 37921038
    66 8pvk:La (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    67 8pvk:Lc (2.55) BS01 rna ? GO:0003723 ... G0SEI0 37921038
    68 8pvk:Ld (2.55) BS01 rna ? GO:0002181 ... G0SD68 37921038
    69 8pvk:Le (2.55) BS01 rna ? GO:0003735 ... G0S6V4 37921038
    70 8pvk:Lf (2.55) BS01 rna ? GO:0002181 ... G0SCL3 37921038
    71 8pvk:Lg (2.55) BS01 rna ? GO:0003735 ... G0SFN0 37921038
    72 8pvk:Lg (2.55) BS02 ZN ? GO:0003735 ... G0SFN0 37921038
    73 8pvk:Lh (2.55) BS01 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    74 8pvk:Lh (2.55) BS02 rna 2.4.99.18 GO:0003735 ... G0S0D7 37921038
    75 8pvk:Li (2.55) BS01 rna ? GO:0002181 ... G0SBN1 37921038
    76 8pvk:Lj (2.55) BS01 rna ? GO:0003723 ... G0S101 37921038
    77 8pvk:Lj (2.55) BS02 rna ? GO:0003723 ... G0S101 37921038
    78 8pvk:Lj (2.55) BS03 ZN ? GO:0003723 ... G0S101 37921038
    79 8pvk:Lk (2.55) BS01 rna N/A GO:0003735 ... N/A 37921038
    80 8pvk:Ll (2.55) BS01 rna ? GO:0003735 ... Q2H9R2 37921038
    81 8pvk:Ll (2.55) BS02 rna ? GO:0003735 ... Q2H9R2 37921038
    82 8pvk:Lp (2.55) BS01 rna ? GO:0003735 ... G0S6B0 37921038
    83 8pvk:Lp (2.55) BS02 ZN ? GO:0003735 ... G0S6B0 37921038
    84 8pvk:Lq (2.55) BS01 rna ? GO:0003735 ... G0SHJ6 37921038
    85 8pvk:Lr (2.55) BS01 rna ? GO:0000470 ... G0S4Z9 37921038
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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