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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pva:0 (4.5) BS01 rna ? GO:0000027 ... P0A7N9 38011573
    2 8pva:1 (4.5) BS01 rna ? GO:0002181 ... P0A7P5 38011573
    3 8pva:2 (4.5) BS01 rna ? GO:0002181 ... P0A7Q1 38011573
    4 8pva:3 (4.5) BS01 rna ? GO:0002181 ... P0A7Q6 38011573
    5 8pva:3 (4.5) BS02 ZN ? GO:0002181 ... P0A7Q6 38011573
    6 8pva:4 (4.5) BS01 rna ? GO:0002181 ... P0A7M9 38011573
    7 8pva:4 (4.5) BS02 ZN ? GO:0002181 ... P0A7M9 38011573
    8 8pva:B (4.5) BS01 rna ? GO:0000028 ... P0A7V0 38011573
    9 8pva:C (4.5) BS01 rna ? GO:0000028 ... P0A7V3 38011573
    10 8pva:D (4.5) BS01 rna ? GO:0000028 ... P0A7V8 38011573
    11 8pva:E (4.5) BS01 rna ? GO:0000028 ... P0A7W1 38011573
    12 8pva:F (4.5) BS01 rna ? GO:0002181 ... P02358 38011573
    13 8pva:G (4.5) BS01 rna ? GO:0000028 ... P02359 38011573
    14 8pva:G (4.5) BS02 rna ? GO:0000028 ... P02359 38011573
    15 8pva:H (4.5) BS01 rna ? GO:0000028 ... P0A7W7 38011573
    16 8pva:I (4.5) BS01 rna ? GO:0000049 ... P0A7X3 38011573
    17 8pva:I (4.5) BS02 rna ? GO:0000049 ... P0A7X3 38011573
    18 8pva:J (4.5) BS01 rna ? GO:0000049 ... P0A7R5 38011573
    19 8pva:K (4.5) BS01 rna ? GO:0002181 ... P0A7R9 38011573
    20 8pva:L (4.5) BS01 rna ? GO:0000049 ... P0A7S3 38011573
    21 8pva:M (4.5) BS01 rna ? GO:0000049 ... P0A7S9 38011573
    22 8pva:M (4.5) BS02 rna ? GO:0000049 ... P0A7S9 38011573
    23 8pva:N (4.5) BS01 rna ? GO:0000028 ... P0AG59 38011573
    24 8pva:O (4.5) BS01 rna ? GO:0000028 ... P0ADZ4 38011573
    25 8pva:O (4.5) BS02 rna ? GO:0000028 ... P0ADZ4 38011573
    26 8pva:P (4.5) BS01 rna ? GO:0000028 ... P0A7T3 38011573
    27 8pva:Q (4.5) BS01 rna ? GO:0000028 ... P0AG63 38011573
    28 8pva:R (4.5) BS01 rna ? GO:0002181 ... P0A7T7 38011573
    29 8pva:S (4.5) BS01 rna ? GO:0000028 ... P0A7U3 38011573
    30 8pva:T (4.5) BS01 rna ? GO:0000028 ... P0A7U7 38011573
    31 8pva:U (4.5) BS01 rna ? GO:0000028 ... P68679 38011573
    32 8pva:c (4.5) BS01 rna ? GO:0000027 ... P60422 38011573
    33 8pva:d (4.5) BS01 rna ? GO:0000027 ... P60438 38011573
    34 8pva:e (4.5) BS01 rna ? GO:0001070 ... P60723 38011573
    35 8pva:f (4.5) BS01 rna ? GO:0000027 ... P62399 38011573
    36 8pva:f (4.5) BS02 rna ? GO:0000027 ... P62399 38011573
    37 8pva:f (4.5) BS03 rna ? GO:0000027 ... P62399 38011573
    38 8pva:g (4.5) BS01 rna ? GO:0000027 ... P0AG55 38011573
    39 8pva:h (4.5) BS01 rna ? GO:0002181 ... P0A7R1 38011573
    40 8pva:i (4.5) BS01 rna ? GO:0002181 ... P0AA10 38011573
    41 8pva:j (4.5) BS01 rna ? GO:0002181 ... P0ADY3 38011573
    42 8pva:j (4.5) BS02 rna ? GO:0002181 ... P0ADY3 38011573
    43 8pva:k (4.5) BS01 rna ? GO:0002181 ... P02413 38011573
    44 8pva:l (4.5) BS01 rna ? GO:0000027 ... P0ADY7 38011573
    45 8pva:l (4.5) BS02 rna ? GO:0000027 ... P0ADY7 38011573
    46 8pva:l (4.5) BS03 rna ? GO:0000027 ... P0ADY7 38011573
    47 8pva:m (4.5) BS01 rna ? GO:0000027 ... P0AG44 38011573
    48 8pva:n (4.5) BS01 rna ? GO:0002181 ... P0C018 38011573
    49 8pva:n (4.5) BS02 rna ? GO:0002181 ... P0C018 38011573
    50 8pva:o (4.5) BS01 rna ? GO:0000027 ... P0A7K6 38011573
    51 8pva:o (4.5) BS02 rna ? GO:0000027 ... P0A7K6 38011573
    52 8pva:p (4.5) BS01 rna ? GO:0000027 ... P0A7L3 38011573
    53 8pva:q (4.5) BS01 rna ? GO:0002181 ... P0AG48 38011573
    54 8pva:r (4.5) BS01 rna ? GO:0002181 ... P61175 38011573
    55 8pva:s (4.5) BS01 rna ? GO:0000027 ... P0ADZ0 38011573
    56 8pva:t (4.5) BS01 rna ? GO:0000027 ... P60624 38011573
    57 8pva:u (4.5) BS01 rna ? GO:0000027 ... P68919 38011573
    58 8pva:v (4.5) BS01 rna ? GO:0000027 ... P0A7L8 38011573
    59 8pva:v (4.5) BS02 rna ? GO:0000027 ... P0A7L8 38011573
    60 8pva:w (4.5) BS01 rna ? GO:0000027 ... P0A7M2 38011573
    61 8pva:x (4.5) BS01 rna ? GO:0000027 ... P0A7M6 38011573
    62 8pva:y (4.5) BS01 rna ? GO:0000027 ... P0AG51 38011573
    63 8pva:y (4.5) BS02 rna ? GO:0000027 ... P0AG51 38011573
    64 8pva:z (4.5) BS01 rna ? GO:0000027 ... P0A7N4 38011573
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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