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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pj3:0 (3.7) BS01 rna N/A N/A O60841 N/A
    2 8pj3:0 (3.7) BS02 rna N/A N/A O60841 N/A
    3 8pj3:0 (3.7) BS03 GTP N/A N/A O60841 N/A
    4 8pj3:0 (3.7) BS04 MG N/A N/A O60841 N/A
    5 8pj3:1 (3.7) BS01 rna N/A N/A P55884 N/A
    6 8pj3:B (3.7) BS01 rna N/A N/A P62280 N/A
    7 8pj3:C (3.7) BS01 rna N/A N/A P62701 N/A
    8 8pj3:D (3.7) BS01 rna N/A N/A P46781 N/A
    9 8pj3:E (3.7) BS01 rna N/A N/A P62266 N/A
    10 8pj3:F (3.7) BS01 rna N/A N/A P62861 N/A
    11 8pj3:F (3.7) BS02 rna N/A N/A P62861 N/A
    12 8pj3:G (3.7) BS01 rna N/A N/A P62081 N/A
    13 8pj3:H (3.7) BS01 rna N/A N/A P42677 N/A
    14 8pj3:I (3.7) BS01 rna N/A N/A P62277 N/A
    15 8pj3:J (3.7) BS01 rna N/A N/A P62244 N/A
    16 8pj3:L (3.7) BS01 rna N/A N/A P15880 N/A
    17 8pj3:L (3.7) BS02 rna N/A N/A P15880 N/A
    18 8pj3:M (3.7) BS01 rna N/A N/A P08708 N/A
    19 8pj3:N (3.7) BS01 rna N/A N/A P08865 N/A
    20 8pj3:O (3.7) BS01 rna N/A N/A P61247 N/A
    21 8pj3:P (3.7) BS01 rna N/A N/A P62263 N/A
    22 8pj3:Q (3.7) BS01 rna N/A N/A P62854 N/A
    23 8pj3:Q (3.7) BS02 rna N/A N/A P62854 N/A
    24 8pj3:Q (3.7) BS03 ZN N/A N/A P62854 N/A
    25 8pj3:R (3.7) BS01 rna N/A N/A P62241 N/A
    26 8pj3:S (3.7) BS01 rna N/A N/A P62753 N/A
    27 8pj3:T (3.7) BS01 rna N/A N/A P62847 N/A
    28 8pj3:V (3.7) BS01 rna N/A N/A P46782 N/A
    29 8pj3:Y (3.7) BS01 rna N/A N/A P62249 N/A
    30 8pj3:Z (3.7) BS01 rna N/A N/A P23396 N/A
    31 8pj3:Z (3.7) BS02 rna N/A N/A P23396 N/A
    32 8pj3:a (3.7) BS01 rna N/A N/A P46783 N/A
    33 8pj3:b (3.7) BS01 rna N/A N/A P62841 N/A
    34 8pj3:b (3.7) BS02 rna N/A N/A P62841 N/A
    35 8pj3:b (3.7) BS03 rna N/A N/A P62841 N/A
    36 8pj3:c (3.7) BS01 rna N/A N/A P63244 N/A
    37 8pj3:d (3.7) BS01 rna N/A N/A P39019 N/A
    38 8pj3:e (3.7) BS01 rna N/A N/A P62851 N/A
    39 8pj3:f (3.7) BS01 rna N/A N/A P62269 N/A
    40 8pj3:f (3.7) BS02 rna N/A N/A P62269 N/A
    41 8pj3:f (3.7) BS03 MG N/A N/A P62269 N/A
    42 8pj3:h (3.7) BS01 rna N/A N/A P60866 N/A
    43 8pj3:i (3.7) BS01 rna N/A N/A P62273 N/A
    44 8pj3:k (3.7) BS01 rna N/A N/A P62979 N/A
    45 8pj3:k (3.7) BS02 ZN N/A N/A P62979 N/A
    46 8pj3:m (3.7) BS01 rna N/A N/A P25398 N/A
    47 8pj3:n (3.7) BS01 rna N/A N/A P62857 N/A
    48 8pj3:n (3.7) BS02 rna N/A N/A P62857 N/A
    49 8pj3:o (3.7) BS01 rna N/A N/A O75821 N/A
    50 8pj3:q (3.7) BS01 rna N/A N/A P47813 N/A
    51 8pj3:q (3.7) BS02 rna N/A N/A P47813 N/A
    52 8pj3:q (3.7) BS03 rna N/A N/A P47813 N/A
    53 8pj3:r (3.7) BS01 rna N/A N/A P05198 N/A
    54 8pj3:r (3.7) BS02 rna N/A N/A P05198 N/A
    55 8pj3:u (3.7) BS01 rna N/A N/A Q14152 N/A
    56 8pj3:x (3.7) BS01 rna N/A N/A O15371 N/A
    57 8pj3:x (3.7) BS02 rna N/A N/A O15371 N/A
    58 8pj3:y (3.7) BS01 rna N/A N/A Q99613 N/A
    59 8pj3:y (3.7) BS02 rna N/A N/A Q99613 N/A
    60 8pj3:z (3.7) BS01 rna N/A N/A P55010 N/A
    61 8pj3:z (3.7) BS02 rna N/A N/A P55010 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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