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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8p2h:1 (2.49) BS01 rna ? GO:0003735 ... Q2FZ60 38902339
    2 8p2h:2 (2.49) BS01 rna ? GO:0003735 ... Q2FW14 38902339
    3 8p2h:3 (2.49) BS01 rna ? GO:0003735 ... P0A0G2 38902339
    4 8p2h:3 (2.49) BS02 rna ? GO:0003735 ... P0A0G2 38902339
    5 8p2h:4 (2.49) BS01 rna ? GO:0003735 ... Q2FWD8 38902339
    6 8p2h:5 (2.49) BS01 rna ? GO:0003735 ... Q2FZF1 38902339
    7 8p2h:5 (2.49) BS02 ZN ? GO:0003735 ... Q2FZF1 38902339
    8 8p2h:6 (2.49) BS01 rna ? GO:0003735 ... Q2FYU6 38902339
    9 8p2h:7 (2.49) BS01 rna ? GO:0003735 ... Q2FUQ0 38902339
    10 8p2h:8 (2.49) BS01 rna ? GO:0003735 ... Q2FXQ0 38902339
    11 8p2h:9 (2.49) BS01 rna ? GO:0003735 ... Q2FW29 38902339
    12 8p2h:9 (2.49) BS02 ZN ? GO:0003735 ... Q2FW29 38902339
    13 8p2h:E (2.49) BS01 rna ? GO:0003746 ... Q2G0N1 38902339
    14 8p2h:E (2.49) BS02 rna ? GO:0003746 ... Q2G0N1 38902339
    15 8p2h:E (2.49) BS03 GDP ? GO:0003746 ... Q2G0N1 38902339
    16 8p2h:E (2.49) BS04 FUA ? GO:0003746 ... Q2G0N1 38902339
    17 8p2h:G (2.49) BS01 rna ? GO:0002181 ... P60430 38902339
    18 8p2h:G (2.49) BS02 MG ? GO:0002181 ... P60430 38902339
    19 8p2h:H (2.49) BS01 rna ? GO:0003735 ... Q2FW06 38902339
    20 8p2h:I (2.49) BS01 rna ? GO:0003735 ... Q2FW07 38902339
    21 8p2h:J (2.49) BS01 rna ? GO:0000049 ... Q2FW18 38902339
    22 8p2h:J (2.49) BS02 rna ? GO:0000049 ... Q2FW18 38902339
    23 8p2h:K (2.49) BS01 rna ? GO:0002181 ... Q2FW21 38902339
    24 8p2h:M (2.49) BS01 rna ? GO:0003729 ... Q2FW38 38902339
    25 8p2h:N (2.49) BS01 rna ? GO:0003735 ... Q2FW16 38902339
    26 8p2h:N (2.49) BS02 rna ? GO:0003735 ... Q2FW16 38902339
    27 8p2h:O (2.49) BS01 rna ? GO:0003735 ... P0A0F8 38902339
    28 8p2h:P (2.49) BS01 rna ? GO:0000049 ... Q2FW13 38902339
    29 8p2h:P (2.49) BS02 rna ? GO:0000049 ... Q2FW13 38902339
    30 8p2h:Q (2.49) BS01 rna ? GO:0003735 ... Q2FW33 38902339
    31 8p2h:R (2.49) BS01 rna ? GO:0003735 ... Q2FW22 38902339
    32 8p2h:R (2.49) BS02 rna ? GO:0003735 ... Q2FW22 38902339
    33 8p2h:S (2.49) BS01 rna ? GO:0003735 ... Q2FZ42 38902339
    34 8p2h:S (2.49) BS02 rna ? GO:0003735 ... Q2FZ42 38902339
    35 8p2h:T (2.49) BS01 rna ? GO:0000027 ... Q2FXQ1 38902339
    36 8p2h:U (2.49) BS01 rna ? GO:0003723 ... Q2FXS8 38902339
    37 8p2h:V (2.49) BS01 rna ? GO:0003735 ... Q2FW11 38902339
    38 8p2h:W (2.49) BS01 rna ? GO:0000027 ... Q2FW08 38902339
    39 8p2h:X (2.49) BS01 rna ? GO:0003723 ... Q2FW17 38902339
    40 8p2h:Y (2.49) BS01 rna ? GO:0003723 ... Q2G0S0 38902339
    41 8p2h:Z (2.49) BS01 rna ? GO:0003735 ... Q2FXT0 38902339
    42 8p2h:Z (2.49) BS02 rna ? GO:0003735 ... Q2FXT0 38902339
    43 8p2h:c (2.49) BS01 rna ? GO:0003735 ... Q2FZ25 38902339
    44 8p2h:d (2.49) BS01 rna ? GO:0003676 ... Q2FW12 38902339
    45 8p2h:e (2.49) BS01 rna ? GO:0003723 ... Q2FXK6 38902339
    46 8p2h:f (2.49) BS01 rna ? GO:0003723 ... Q2FW23 38902339
    47 8p2h:g (2.49) BS01 rna ? GO:0003735 ... Q2G113 38902339
    48 8p2h:h (2.49) BS01 rna ? GO:0000028 ... P48940 38902339
    49 8p2h:i (2.49) BS01 rna ? GO:0003735 ... Q2FW20 38902339
    50 8p2h:j (2.49) BS01 rna ? GO:0003723 ... Q2FW39 38902339
    51 8p2h:j (2.49) BS02 rna ? GO:0003723 ... Q2FW39 38902339
    52 8p2h:k (2.49) BS01 rna ? GO:0000049 ... A5IV35 38902339
    53 8p2h:l (2.49) BS01 rna ? GO:0003735 ... Q2FW31 38902339
    54 8p2h:m (2.49) BS01 rna ? GO:0000049 ... P0A0H0 38902339
    55 8p2h:n (2.49) BS01 rna ? GO:0000049 ... Q2FW30 38902339
    56 8p2h:o (2.49) BS01 rna ? GO:0003735 ... Q2FW19 38902339
    57 8p2h:o (2.49) BS02 ZN ? GO:0003735 ... Q2FW19 38902339
    58 8p2h:p (2.49) BS01 rna ? GO:0003735 ... Q2G2Q1 38902339
    59 8p2h:p (2.49) BS02 rna ? GO:0003735 ... Q2G2Q1 38902339
    60 8p2h:q (2.49) BS01 rna ? GO:0003735 ... Q2FZ45 38902339
    61 8p2h:r (2.49) BS01 rna ? GO:0003735 ... Q2FW15 38902339
    62 8p2h:s (2.49) BS01 rna ? GO:0003735 ... Q2G111 38902339
    63 8p2h:t (2.49) BS01 rna ? GO:0000028 ... Q2FW10 38902339
    64 8p2h:u (2.49) BS01 rna ? GO:0003723 ... Q2FXY6 38902339
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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