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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8oiq:Aa (3.5) BS01 rna ? GO:0003747 ... O75570 37141370
    2 8oiq:Aa (3.5) BS02 rna ? GO:0003747 ... O75570 37141370
    3 8oiq:B1 (3.5) BS01 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    4 8oiq:B1 (3.5) BS02 peptide ? GO:0003735 ... A0A8D0VGD9 37141370
    5 8oiq:BA (3.5) BS01 rna ? GO:0003735 ... A0A4X1TXR4 37141370
    6 8oiq:BB (3.5) BS01 rna ? GO:0003735 ... A0A480JJI1 37141370
    7 8oiq:BC (3.5) BS01 rna ? GO:0003723 ... F1RHJ1 37141370
    8 8oiq:BD (3.5) BS01 rna ? GO:0003735 ... A0A4X1U0F6 37141370
    9 8oiq:BE (3.5) BS01 rna ? GO:0003735 ... A0A286ZTW8 37141370
    10 8oiq:BF (3.5) BS01 rna ? GO:0003735 ... F1SGC7 37141370
    11 8oiq:BG (3.5) BS01 rna ? GO:0003735 ... A0A8D0VJF4 37141370
    12 8oiq:BH (3.5) BS01 rna ? GO:0003735 ... I3LTC4 37141370
    13 8oiq:BH (3.5) BS02 ZN ? GO:0003735 ... I3LTC4 37141370
    14 8oiq:BI (3.5) BS01 rna ? GO:0003735 ... A0A4X1TLP9 37141370
    15 8oiq:BJ (3.5) BS01 rna ? GO:0003735 ... A0A8D1JE64 37141370
    16 8oiq:BK (3.5) BS01 rna ? GO:0003735 ... A0A5G2QZK0 37141370
    17 8oiq:BL (3.5) BS01 rna ? GO:0003723 ... A0A287A143 37141370
    18 8oiq:BM (3.5) BS01 rna ? GO:0003735 ... A0A140UHW4 37141370
    19 8oiq:BN (3.5) BS01 rna ? GO:0003735 ... A0A287B9C4 37141370
    20 8oiq:BO (3.5) BS01 rna ? GO:0003735 ... I3LR45 37141370
    21 8oiq:BP (3.5) BS01 peptide ? GO:0005840 ... F1RWJ0 37141370
    22 8oiq:BP (3.5) BS02 peptide ? GO:0005840 ... F1RWJ0 37141370
    23 8oiq:BP (3.5) BS03 peptide ? GO:0005840 ... F1RWJ0 37141370
    24 8oiq:BP (3.5) BS04 peptide ? GO:0005840 ... F1RWJ0 37141370
    25 8oiq:BP (3.5) BS05 rna ? GO:0005840 ... F1RWJ0 37141370
    26 8oiq:BP (3.5) BS06 FES ? GO:0005840 ... F1RWJ0 37141370
    27 8oiq:BQ (3.5) BS01 rna ? GO:0003735 ... F1RU54 37141370
    28 8oiq:BR (3.5) BS01 rna ? GO:0003729 ... K7GP19 37141370
    29 8oiq:BS (3.5) BS01 rna ? GO:0003735 ... A0A287BMZ6 37141370
    30 8oiq:BT (3.5) BS01 rna ? GO:0003735 ... A0A8D0HMG9 37141370
    31 8oiq:BU (3.5) BS01 rna ? GO:0003735 ... F1RI89 37141370
    32 8oiq:BV (3.5) BS01 rna ? GO:0003735 ... F1RMQ4 37141370
    33 8oiq:BW (3.5) BS01 rna ? GO:0003735 ... A0A4X1VX01 37141370
    34 8oiq:BW (3.5) BS02 rna ? GO:0003735 ... A0A4X1VX01 37141370
    35 8oiq:BX (3.5) BS01 rna ? GO:0003735 ... I3LNJ0 37141370
    36 8oiq:BY (3.5) BS01 rna ? GO:0003735 ... A0A286ZU56 37141370
    37 8oiq:BZ (3.5) BS01 rna ? GO:0003723 ... F1RY70 37141370
    38 8oiq:Ba (3.5) BS01 rna ? GO:0003735 ... F1S9B7 37141370
    39 8oiq:Bc (3.5) BS01 rna ? N/A I3LN63 37141370
    40 8oiq:Bd (3.5) BS01 rna ? GO:0003735 ... A0A4X1ULI6 37141370
    41 8oiq:Be (3.5) BS01 rna ? GO:0003735 ... A0A287BP93 37141370
    42 8oiq:Bg (3.5) BS01 rna ? GO:0005634 ... A0A286ZXA6 37141370
    43 8oiq:Bh (3.5) BS01 rna ? GO:0003735 ... F1RRH6 37141370
    44 8oiq:Bh (3.5) BS02 FES ? GO:0003735 ... F1RRH6 37141370
    45 8oiq:Bi (3.5) BS01 rna ? GO:0003735 ... A0A480QIM3 37141370
    46 8oiq:Bj (3.5) BS01 rna ? GO:0003723 ... A0A287AF82 37141370
    47 8oiq:Bl (3.5) BS01 rna ? GO:0003735 ... A0A287A731 37141370
    48 8oiq:Bl (3.5) BS02 ZN ? GO:0003735 ... A0A287A731 37141370
    49 8oiq:Bm (3.5) BS01 rna ? GO:0003735 ... A0A287BIV6 37141370
    50 8oiq:Bn (3.5) BS01 rna ? GO:0005739 ... F1RW03 37141370
    51 8oiq:Bn (3.5) BS02 rna ? GO:0005739 ... F1RW03 37141370
    52 8oiq:Bp (3.5) BS01 rna ? GO:0005739 ... A0A286ZP98 37141370
    53 8oiq:Bp (3.5) BS02 rna ? GO:0005739 ... A0A286ZP98 37141370
    54 8oiq:Bq (3.5) BS01 rna ? GO:0003735 ... A0A8D1BPA5 37141370
    55 8oiq:Bq (3.5) BS02 MG ? GO:0003735 ... A0A8D1BPA5 37141370
    56 8oiq:Br (3.5) BS01 rna ? GO:0005739 ... A0A287BQA1 37141370
    57 8oiq:Bs (3.5) BS01 rna ? GO:0003735 ... F1S8U4 37141370
    58 8oiq:Bt (3.5) BS01 rna ? GO:0003723 ... F1SR64 37141370
    59 8oiq:Bu (3.5) BS01 rna ? GO:0005739 ... I3LGM5 37141370
    60 8oiq:Bv (3.5) BS01 rna ? GO:0003735 ... F1SRT0 37141370
    61 8oiq:Bv (3.5) BS02 PHE ? GO:0003735 ... F1SRT0 37141370
    62 8oiq:Bw (3.5) BS01 rna ? GO:0005739 ... A0A480J9Z6 37141370
    63 8oiq:Bw (3.5) BS02 rna ? GO:0005739 ... A0A480J9Z6 37141370
    64 8oiq:Bx (3.5) BS01 rna ? GO:0003735 ... A0A287A0K2 37141370
    65 8oiq:Bz (3.5) BS01 rna ? GO:0003735 ... A0A8D1VKN8 37141370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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