Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8oip:AB (3.6) BS01 peptide ? GO:0003735 ... F1SG95 37141370
    2 8oip:AB (3.6) BS02 rna ? GO:0003735 ... F1SG95 37141370
    3 8oip:AC (3.6) BS01 rna ? GO:0005739 ... A0A287ANU4 37141370
    4 8oip:AD (3.6) BS01 rna ? GO:0005634 ... A0A8D2A802 37141370
    5 8oip:AE (3.6) BS01 rna ? GO:0003735 ... A0A4X1TSM9 37141370
    6 8oip:AF (3.6) BS01 rna ? GO:0000028 ... A0A286ZJ25 37141370
    7 8oip:AH (3.6) BS01 peptide ? GO:0005739 ... F1RUU2 37141370
    8 8oip:AH (3.6) BS02 rna ? GO:0005739 ... F1RUU2 37141370
    9 8oip:AJ (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL52 37141370
    10 8oip:AK (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL53 37141370
    11 8oip:AL (3.6) BS01 rna ? GO:0003735 ... A0A287AKS1 37141370
    12 8oip:AM (3.6) BS01 rna ? GO:0003735 ... A0A480JTD7 37141370
    13 8oip:AN (3.6) BS01 rna ? GO:0003735 ... A0A8D1UDM1 37141370
    14 8oip:AO (3.6) BS01 rna ? GO:0003735 ... Q767K8 37141370
    15 8oip:AO (3.6) BS02 ZN ? GO:0003735 ... Q767K8 37141370
    16 8oip:AP (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL54 37141370
    17 8oip:AP (3.6) BS02 FS2 ? GO:0003735 ... A0A0M3KL54 37141370
    18 8oip:AQ (3.6) BS01 rna ? GO:0003735 ... A0A286ZNB3 37141370
    19 8oip:AS (3.6) BS01 rna ? GO:0003735 ... A0A287AEW3 37141370
    20 8oip:AT (3.6) BS01 rna ? GO:0003735 ... A0A0M3KL55 37141370
    21 8oip:AT (3.6) BS02 FS2 ? GO:0003735 ... A0A0M3KL55 37141370
    22 8oip:AU (3.6) BS01 rna ? GO:0005763 ... A0A287AY01 37141370
    23 8oip:AV (3.6) BS01 peptide ? N/A A0A5G2R1I0 37141370
    24 8oip:AV (3.6) BS02 rna ? N/A A0A5G2R1I0 37141370
    25 8oip:AX (3.6) BS01 rna ? GO:0005654 ... A0A8D1XNL0 37141370
    26 8oip:AX (3.6) BS02 ATP ? GO:0005654 ... A0A8D1XNL0 37141370
    27 8oip:AX (3.6) BS03 GDP ? GO:0005654 ... A0A8D1XNL0 37141370
    28 8oip:AZ (3.6) BS01 peptide ? GO:0005739 ... A0A4X1V2H3 37141370
    29 8oip:AZ (3.6) BS02 rna ? GO:0005739 ... A0A4X1V2H3 37141370
    30 8oip:Aa (3.6) BS01 rna ? GO:0003747 ... O75570 37141370
    31 8oip:Aa (3.6) BS02 rna ? GO:0003747 ... O75570 37141370
    32 8oip:Aa (3.6) BS03 rna ? GO:0003747 ... O75570 37141370
    33 8oip:Ab (3.6) BS01 rna ? GO:0003735 ... F1S001 37141370
    34 8oip:Ab (3.6) BS02 MG ? GO:0003735 ... F1S001 37141370
    35 8oip:Ac (3.6) BS01 rna ? GO:0005739 ... A0A4X1SZV4 37141370
    36 8oip:Ad (3.6) BS01 rna ? GO:0003723 ... F1SU66 37141370
    37 8oip:Ad (3.6) BS02 rna ? GO:0003723 ... F1SU66 37141370
    38 8oip:Ag (3.6) BS01 rna ? GO:0003723 ... I3LU08 37141370
    39 8oip:Ag (3.6) BS02 rna ? GO:0003723 ... I3LU08 37141370
    40 8oip:Ai (3.6) BS01 rna ? GO:0003735 ... A0A286ZJJ6 37141370
    41 8oip:Aj (3.6) BS01 rna ? GO:0003735 ... A0A287AVS9 37141370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417