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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8k82:CN (3.0) BS01 rna N/A GO:0000289 ... Q12514 38942792
    2 8k82:CN (3.0) BS02 rna N/A GO:0000289 ... Q12514 38942792
    3 8k82:CN (3.0) BS03 rna N/A GO:0000289 ... Q12514 38942792
    4 8k82:L1 (3.0) BS01 rna N/A GO:0000055 ... P0CX43 38942792
    5 8k82:LA (3.0) BS01 rna N/A GO:0002181 ... P0CX45 38942792
    6 8k82:LA (3.0) BS02 rna N/A GO:0002181 ... P0CX45 38942792
    7 8k82:LB (3.0) BS01 rna N/A GO:0000027 ... P14126 38942792
    8 8k82:LC (3.0) BS01 rna N/A GO:0002181 ... P10664 38942792
    9 8k82:LC (3.0) BS02 rna N/A GO:0002181 ... P10664 38942792
    10 8k82:LD (3.0) BS01 rna N/A GO:0000027 ... P26321 38942792
    11 8k82:LD (3.0) BS02 rna N/A GO:0000027 ... P26321 38942792
    12 8k82:LE (3.0) BS01 rna N/A GO:0000027 ... Q02326 38942792
    13 8k82:LF (3.0) BS01 rna N/A GO:0000463 ... P05737 38942792
    14 8k82:LF (3.0) BS02 rna N/A GO:0000463 ... P05737 38942792
    15 8k82:LG (3.0) BS01 rna N/A GO:0000470 ... P17076 38942792
    16 8k82:LG (3.0) BS02 rna N/A GO:0000470 ... P17076 38942792
    17 8k82:LH (3.0) BS01 rna N/A GO:0002181 ... P05738 38942792
    18 8k82:LI (3.0) BS01 rna N/A GO:0000027 ... P41805 38942792
    19 8k82:LI (3.0) BS02 rna N/A GO:0000027 ... P41805 38942792
    20 8k82:LJ (3.0) BS01 rna N/A GO:0000027 ... P0C0W9 38942792
    21 8k82:LJ (3.0) BS02 rna N/A GO:0000027 ... P0C0W9 38942792
    22 8k82:LJ (3.0) BS03 rna N/A GO:0000027 ... P0C0W9 38942792
    23 8k82:LK (3.0) BS01 rna N/A GO:0000027 ... P0CX53 38942792
    24 8k82:LL (3.0) BS01 rna N/A GO:0002181 ... Q12690 38942792
    25 8k82:LL (3.0) BS02 rna N/A GO:0002181 ... Q12690 38942792
    26 8k82:LM (3.0) BS01 rna N/A GO:0000027 ... P36105 38942792
    27 8k82:LN (3.0) BS01 rna N/A GO:0002181 ... P05748 38942792
    28 8k82:LN (3.0) BS02 rna N/A GO:0002181 ... P05748 38942792
    29 8k82:LN (3.0) BS03 MG N/A GO:0002181 ... P05748 38942792
    30 8k82:LO (3.0) BS01 rna N/A GO:0000470 ... P26784 38942792
    31 8k82:LP (3.0) BS01 rna N/A GO:0000448 ... P05740 38942792
    32 8k82:LP (3.0) BS02 rna N/A GO:0000448 ... P05740 38942792
    33 8k82:LQ (3.0) BS01 rna N/A GO:0002181 ... P0CX49 38942792
    34 8k82:LR (3.0) BS01 rna N/A GO:0002181 ... P0CX82 38942792
    35 8k82:LS (3.0) BS01 rna N/A GO:0002181 ... P0CX23 38942792
    36 8k82:LS (3.0) BS02 rna N/A GO:0002181 ... P0CX23 38942792
    37 8k82:LT (3.0) BS01 rna N/A GO:0002181 ... Q02753 38942792
    38 8k82:LT (3.0) BS02 rna N/A GO:0002181 ... Q02753 38942792
    39 8k82:LU (3.0) BS01 rna N/A GO:0002181 ... P05749 38942792
    40 8k82:LV (3.0) BS01 rna N/A GO:0002181 ... P0CX41 38942792
    41 8k82:LV (3.0) BS02 rna N/A GO:0002181 ... P0CX41 38942792
    42 8k82:LW (3.0) BS01 rna N/A GO:0002181 ... P04449 38942792
    43 8k82:LX (3.0) BS01 rna N/A GO:0000027 ... P04456 38942792
    44 8k82:LX (3.0) BS02 rna N/A GO:0000027 ... P04456 38942792
    45 8k82:LY (3.0) BS01 rna N/A GO:0002181 ... P05743 38942792
    46 8k82:LY (3.0) BS02 rna N/A GO:0002181 ... P05743 38942792
    47 8k82:LZ (3.0) BS01 rna N/A GO:0002181 ... P0C2H6 38942792
    48 8k82:La (3.0) BS01 rna N/A GO:0002181 ... P02406 38942792
    49 8k82:Lb (3.0) BS01 rna N/A GO:0002181 ... P05747 38942792
    50 8k82:Lc (3.0) BS01 rna N/A GO:0002181 ... P14120 38942792
    51 8k82:Ld (3.0) BS01 rna N/A GO:0002181 ... P0C2H8 38942792
    52 8k82:Le (3.0) BS01 rna N/A GO:0002181 ... P38061 38942792
    53 8k82:Lf (3.0) BS01 rna N/A GO:0000027 ... P05744 38942792
    54 8k82:Lg (3.0) BS01 rna N/A GO:0002181 ... P87262 38942792
    55 8k82:Lg (3.0) BS02 ZN N/A GO:0002181 ... P87262 38942792
    56 8k82:Lh (3.0) BS01 rna N/A GO:0000463 ... P0CX84 38942792
    57 8k82:Lh (3.0) BS02 rna N/A GO:0000463 ... P0CX84 38942792
    58 8k82:Li (3.0) BS01 rna N/A GO:0002181 ... P05745 38942792
    59 8k82:Lj (3.0) BS01 rna N/A GO:0000448 ... P49166 38942792
    60 8k82:Lj (3.0) BS02 rna N/A GO:0000448 ... P49166 38942792
    61 8k82:Lj (3.0) BS03 T1C N/A GO:0000448 ... P49166 38942792
    62 8k82:Lj (3.0) BS04 ZN N/A GO:0000448 ... P49166 38942792
    63 8k82:Lk (3.0) BS01 rna N/A GO:0002181 ... P49167 38942792
    64 8k82:Ll (3.0) BS01 rna N/A GO:0002181 ... P04650 38942792
    65 8k82:Ll (3.0) BS02 rna N/A GO:0002181 ... P04650 38942792
    66 8k82:Lm (3.0) BS01 rna N/A GO:0000027 ... P0CH08 38942792
    67 8k82:Lm (3.0) BS02 ZN N/A GO:0000027 ... P0CH08 38942792
    68 8k82:Lo (3.0) BS01 rna N/A GO:0002181 ... P0CX27 38942792
    69 8k82:Lo (3.0) BS02 ZN N/A GO:0002181 ... P0CX27 38942792
    70 8k82:Lp (3.0) BS01 rna N/A GO:0002181 ... P0CX25 38942792
    71 8k82:Lp (3.0) BS02 ZN N/A GO:0002181 ... P0CX25 38942792
    72 8k82:P0 (3.0) BS01 rna N/A GO:0000027 ... P05317 38942792
    73 8k82:SA (3.0) BS01 rna N/A GO:0000028 ... P32905 38942792
    74 8k82:SB (3.0) BS01 rna N/A GO:0000462 ... P33442 38942792
    75 8k82:SC (3.0) BS01 rna N/A GO:0000054 ... P25443 38942792
    76 8k82:SD (3.0) BS01 rna N/A GO:0000054 ... P05750 38942792
    77 8k82:SE (3.0) BS01 rna N/A GO:0002181 ... P0CX35 38942792
    78 8k82:SF (3.0) BS01 rna N/A GO:0000028 ... P26783 38942792
    79 8k82:SG (3.0) BS01 rna N/A GO:0000462 ... P0CX37 38942792
    80 8k82:SH (3.0) BS01 rna N/A GO:0002181 ... P26786 38942792
    81 8k82:SI (3.0) BS01 rna N/A GO:0000462 ... P0CX39 38942792
    82 8k82:SI (3.0) BS02 rna N/A GO:0000462 ... P0CX39 38942792
    83 8k82:SJ (3.0) BS01 rna N/A GO:0000462 ... O13516 38942792
    84 8k82:SK (3.0) BS01 rna N/A GO:0000054 ... Q08745 38942792
    85 8k82:SL (3.0) BS01 rna N/A GO:0000028 ... P0CX47 38942792
    86 8k82:SM (3.0) BS01 rna N/A GO:0000028 ... P48589 38942792
    87 8k82:SN (3.0) BS01 rna N/A GO:0000462 ... P05756 38942792
    88 8k82:SN (3.0) BS02 rna N/A GO:0000462 ... P05756 38942792
    89 8k82:SO (3.0) BS01 rna N/A GO:0000028 ... P06367 38942792
    90 8k82:SP (3.0) BS01 rna N/A GO:0000028 ... Q01855 38942792
    91 8k82:SQ (3.0) BS01 rna N/A GO:0000462 ... P0CX51 38942792
    92 8k82:SR (3.0) BS01 rna N/A GO:0000028 ... P02407 38942792
    93 8k82:SS (3.0) BS01 rna N/A GO:0000054 ... P0CX55 38942792
    94 8k82:ST (3.0) BS01 rna N/A GO:0000028 ... P07280 38942792
    95 8k82:SU (3.0) BS01 rna N/A GO:0000462 ... P38701 38942792
    96 8k82:SV (3.0) BS01 rna N/A GO:0000447 ... P0C0V8 38942792
    97 8k82:SW (3.0) BS01 rna N/A GO:0002181 ... P0C0W1 38942792
    98 8k82:SX (3.0) BS01 rna N/A GO:0000462 ... P0CX29 38942792
    99 8k82:SY (3.0) BS01 rna N/A GO:0000462 ... P0CX31 38942792
    100 8k82:SZ (3.0) BS01 rna N/A GO:0002181 ... Q3E792 38942792
    101 8k82:Sa (3.0) BS01 rna N/A GO:0000054 ... P39939 38942792
    102 8k82:Sa (3.0) BS02 ZN N/A GO:0000054 ... P39939 38942792
    103 8k82:Sb (3.0) BS01 rna N/A GO:0000028 ... P35997 38942792
    104 8k82:Sb (3.0) BS02 ZN N/A GO:0000028 ... P35997 38942792
    105 8k82:Sc (3.0) BS01 rna N/A GO:0000028 ... Q3E7X9 38942792
    106 8k82:Sd (3.0) BS01 rna N/A GO:0002181 ... P41057 38942792
    107 8k82:Sd (3.0) BS02 ZN N/A GO:0002181 ... P41057 38942792
    108 8k82:Se (3.0) BS01 rna N/A GO:0002181 ... P0CX33 38942792
    109 8k82:Sf (3.0) BS01 rna N/A GO:0000028 ... P05759 38942792
    110 8k82:Sf (3.0) BS02 ZN N/A GO:0000028 ... P05759 38942792
    111 8k82:Sg (3.0) BS01 rna N/A GO:0001965 ... P38011 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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