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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 337 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jjr:A (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I308 38493166
    2 8jjr:A (2.8) BS02 CLA N/A GO:0009765 ... A0AA36I308 38493166
    3 8jjr:A (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I308 38493166
    4 8jjr:A (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I308 38493166
    5 8jjr:A (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I308 38493166
    6 8jjr:A (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I308 38493166
    7 8jjr:A (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I308 38493166
    8 8jjr:A (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36I308 38493166
    9 8jjr:A (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I308 38493166
    10 8jjr:A (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I308 38493166
    11 8jjr:A (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I308 38493166
    12 8jjr:A (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I308 38493166
    13 8jjr:A (2.8) BS13 UIX N/A GO:0009765 ... A0AA36I308 38493166
    14 8jjr:A (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    15 8jjr:A (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    16 8jjr:A (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I308 38493166
    17 8jjr:A (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    18 8jjr:A (2.8) BS18 CLA N/A GO:0009765 ... A0AA36I308 38493166
    19 8jjr:B (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    20 8jjr:B (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    21 8jjr:B (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    22 8jjr:B (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    23 8jjr:B (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    24 8jjr:B (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    25 8jjr:B (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    26 8jjr:B (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    27 8jjr:B (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    28 8jjr:B (2.8) BS10 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    29 8jjr:B (2.8) BS11 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    30 8jjr:B (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    31 8jjr:B (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    32 8jjr:B (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    33 8jjr:B (2.8) BS15 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    34 8jjr:B (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    35 8jjr:B (2.8) BS17 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    36 8jjr:C (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    37 8jjr:C (2.8) BS02 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    38 8jjr:C (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    39 8jjr:C (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    40 8jjr:C (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    41 8jjr:C (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    42 8jjr:C (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    43 8jjr:C (2.8) BS08 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    44 8jjr:C (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    45 8jjr:C (2.8) BS10 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    46 8jjr:C (2.8) BS11 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    47 8jjr:C (2.8) BS12 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    48 8jjr:C (2.8) BS13 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    49 8jjr:C (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    50 8jjr:C (2.8) BS15 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    51 8jjr:C (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    52 8jjr:C (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    53 8jjr:C (2.8) BS18 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    54 8jjr:C (2.8) BS19 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    55 8jjr:D (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    56 8jjr:D (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    57 8jjr:D (2.8) BS03 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    58 8jjr:D (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    59 8jjr:D (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    60 8jjr:D (2.8) BS06 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    61 8jjr:D (2.8) BS07 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    62 8jjr:D (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    63 8jjr:D (2.8) BS09 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    64 8jjr:D (2.8) BS10 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    65 8jjr:D (2.8) BS11 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    66 8jjr:D (2.8) BS12 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    67 8jjr:D (2.8) BS13 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    68 8jjr:D (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    69 8jjr:D (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    70 8jjr:D (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    71 8jjr:D (2.8) BS17 UIX N/A GO:0009765 ... A0AA36JNS8 38493166
    72 8jjr:D (2.8) BS18 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    73 8jjr:E (2.8) BS01 CLA N/A GO:0009765 ... N/A 38493166
    74 8jjr:E (2.8) BS02 DD6 N/A GO:0009765 ... N/A 38493166
    75 8jjr:E (2.8) BS03 DD6 N/A GO:0009765 ... N/A 38493166
    76 8jjr:E (2.8) BS04 KC2 N/A GO:0009765 ... N/A 38493166
    77 8jjr:E (2.8) BS05 CLA N/A GO:0009765 ... N/A 38493166
    78 8jjr:E (2.8) BS06 CLA N/A GO:0009765 ... N/A 38493166
    79 8jjr:E (2.8) BS07 CLA N/A GO:0009765 ... N/A 38493166
    80 8jjr:E (2.8) BS08 CLA N/A GO:0009765 ... N/A 38493166
    81 8jjr:E (2.8) BS09 CLA N/A GO:0009765 ... N/A 38493166
    82 8jjr:E (2.8) BS10 CLA N/A GO:0009765 ... N/A 38493166
    83 8jjr:E (2.8) BS11 CLA N/A GO:0009765 ... N/A 38493166
    84 8jjr:E (2.8) BS12 CLA N/A GO:0009765 ... N/A 38493166
    85 8jjr:E (2.8) BS13 KC2 N/A GO:0009765 ... N/A 38493166
    86 8jjr:E (2.8) BS14 CLA N/A GO:0009765 ... N/A 38493166
    87 8jjr:E (2.8) BS15 CLA N/A GO:0009765 ... N/A 38493166
    88 8jjr:E (2.8) BS16 DD6 N/A GO:0009765 ... N/A 38493166
    89 8jjr:E (2.8) BS17 DD6 N/A GO:0009765 ... N/A 38493166
    90 8jjr:E (2.8) BS18 DD6 N/A GO:0009765 ... N/A 38493166
    91 8jjr:E (2.8) BS19 UIX N/A GO:0009765 ... N/A 38493166
    92 8jjr:E (2.8) BS20 DD6 N/A GO:0009765 ... N/A 38493166
    93 8jjr:F (2.8) BS01 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    94 8jjr:F (2.8) BS02 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    95 8jjr:F (2.8) BS03 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    96 8jjr:F (2.8) BS04 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    97 8jjr:F (2.8) BS05 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    98 8jjr:F (2.8) BS06 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    99 8jjr:F (2.8) BS07 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    100 8jjr:F (2.8) BS08 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    101 8jjr:F (2.8) BS09 KC2 N/A GO:0009765 ... A0AA36INW6 38493166
    102 8jjr:F (2.8) BS10 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    103 8jjr:F (2.8) BS11 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    104 8jjr:F (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    105 8jjr:F (2.8) BS13 PID N/A GO:0009765 ... A0AA36INW6 38493166
    106 8jjr:F (2.8) BS14 PID N/A GO:0009765 ... A0AA36INW6 38493166
    107 8jjr:F (2.8) BS15 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    108 8jjr:F (2.8) BS16 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    109 8jjr:G (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    110 8jjr:G (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36I3A4 38493166
    111 8jjr:G (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    112 8jjr:G (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    113 8jjr:G (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    114 8jjr:G (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    115 8jjr:G (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    116 8jjr:G (2.8) BS08 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    117 8jjr:G (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    118 8jjr:G (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    119 8jjr:G (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    120 8jjr:G (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    121 8jjr:G (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    122 8jjr:G (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    123 8jjr:G (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    124 8jjr:G (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I3A4 38493166
    125 8jjr:G (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    126 8jjr:H (2.8) BS01 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    127 8jjr:H (2.8) BS02 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    128 8jjr:H (2.8) BS03 KC2 N/A GO:0009765 ... A0AA36NGX7 38493166
    129 8jjr:H (2.8) BS04 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    130 8jjr:H (2.8) BS05 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    131 8jjr:H (2.8) BS06 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    132 8jjr:H (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    133 8jjr:H (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    134 8jjr:H (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    135 8jjr:H (2.8) BS10 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    136 8jjr:H (2.8) BS11 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    137 8jjr:H (2.8) BS12 KC2 N/A GO:0009765 ... A0AA36NGX7 38493166
    138 8jjr:H (2.8) BS13 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    139 8jjr:H (2.8) BS14 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    140 8jjr:H (2.8) BS15 UIX N/A GO:0009765 ... A0AA36NGX7 38493166
    141 8jjr:H (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    142 8jjr:H (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    143 8jjr:H (2.8) BS18 UIX N/A GO:0009765 ... A0AA36NGX7 38493166
    144 8jjr:H (2.8) BS19 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    145 8jjr:H (2.8) BS20 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    146 8jjr:H (2.8) BS21 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    147 8jjr:H (2.8) BS22 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    148 8jjr:I (2.8) BS01 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    149 8jjr:I (2.8) BS02 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    150 8jjr:I (2.8) BS03 KC2 N/A GO:0009765 ... A0AA36HTH0 38493166
    151 8jjr:I (2.8) BS04 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    152 8jjr:I (2.8) BS05 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    153 8jjr:I (2.8) BS06 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    154 8jjr:I (2.8) BS07 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    155 8jjr:I (2.8) BS08 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    156 8jjr:I (2.8) BS09 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    157 8jjr:I (2.8) BS10 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    158 8jjr:I (2.8) BS11 UIX N/A GO:0009765 ... A0AA36HTH0 38493166
    159 8jjr:I (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36HTH0 38493166
    160 8jjr:I (2.8) BS13 PID N/A GO:0009765 ... A0AA36HTH0 38493166
    161 8jjr:I (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36HTH0 38493166
    162 8jjr:I (2.8) BS15 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    163 8jjr:I (2.8) BS16 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    164 8jjr:I (2.8) BS17 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    165 8jjr:J (2.8) BS01 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    166 8jjr:J (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36N2P9 38493166
    167 8jjr:J (2.8) BS03 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    168 8jjr:J (2.8) BS04 KC2 N/A GO:0009765 ... A0AA36N2P9 38493166
    169 8jjr:J (2.8) BS05 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    170 8jjr:J (2.8) BS06 KC2 N/A GO:0009765 ... A0AA36N2P9 38493166
    171 8jjr:J (2.8) BS07 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    172 8jjr:J (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36N2P9 38493166
    173 8jjr:J (2.8) BS09 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    174 8jjr:J (2.8) BS10 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    175 8jjr:J (2.8) BS11 DD6 N/A GO:0009765 ... A0AA36N2P9 38493166
    176 8jjr:J (2.8) BS12 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    177 8jjr:J (2.8) BS13 PID N/A GO:0009765 ... A0AA36N2P9 38493166
    178 8jjr:J (2.8) BS14 UIX N/A GO:0009765 ... A0AA36N2P9 38493166
    179 8jjr:K (2.8) BS01 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    180 8jjr:K (2.8) BS02 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    181 8jjr:K (2.8) BS03 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    182 8jjr:K (2.8) BS04 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    183 8jjr:K (2.8) BS05 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    184 8jjr:K (2.8) BS06 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    185 8jjr:K (2.8) BS07 KC2 N/A GO:0009765 ... A0AA36J0D5 38493166
    186 8jjr:K (2.8) BS08 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    187 8jjr:K (2.8) BS09 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    188 8jjr:K (2.8) BS10 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    189 8jjr:K (2.8) BS11 PID N/A GO:0009765 ... A0AA36J0D5 38493166
    190 8jjr:K (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36J0D5 38493166
    191 8jjr:T (2.8) BS01 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    192 8jjr:T (2.8) BS02 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    193 8jjr:T (2.8) BS03 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    194 8jjr:T (2.8) BS04 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    195 8jjr:T (2.8) BS05 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    196 8jjr:T (2.8) BS06 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    197 8jjr:T (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    198 8jjr:T (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    199 8jjr:T (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    200 8jjr:T (2.8) BS10 KC2 N/A GO:0009765 ... A0AA36NBE3 38493166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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