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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jh2:A (5.7) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    2 8jh2:A (5.7) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    3 8jh2:A (5.7) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    4 8jh2:A (5.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    5 8jh2:A (5.7) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37981206
    6 8jh2:B (5.7) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    7 8jh2:B (5.7) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    8 8jh2:B (5.7) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37981206
    9 8jh2:C (5.7) BS01 ZN ? GO:0000428 ... C4R7L2 37981206
    10 8jh2:I (5.7) BS01 ZN ? GO:0000428 ... F2QPE6 37981206
    11 8jh2:I (5.7) BS02 ZN ? GO:0000428 ... F2QPE6 37981206
    12 8jh2:J (5.7) BS01 ZN ? GO:0000428 ... C4R009 37981206
    13 8jh2:L (5.7) BS01 ZN ? GO:0001054 ... F2QMI1 37981206
    14 8jh2:M (5.7) BS01 ZN ? GO:0000993 ... C4QZ45 37981206
    15 8jh2:V (5.7) BS01 ZN ? GO:0000775 ... C4R0E6 37981206
    16 8jh2:W (5.7) BS01 dna ? GO:0003711 ... C4R370 37981206
    17 8jh2:a (5.7) BS01 dna ? GO:0000775 ... P84243 37981206
    18 8jh2:a (5.7) BS02 dna ? GO:0000775 ... P84243 37981206
    19 8jh2:c (5.7) BS01 dna ? GO:0000786 ... P04908 37981206
    20 8jh2:c (5.7) BS02 dna ? GO:0000786 ... P04908 37981206
    21 8jh2:d (5.7) BS01 dna ? GO:0000786 ... P06899 37981206
    22 8jh2:e (5.7) BS01 dna ? GO:0000775 ... P84243 37981206
    23 8jh2:e (5.7) BS02 dna ? GO:0000775 ... P84243 37981206
    24 8jh2:f (5.7) BS01 dna ? GO:0000781 ... P62805 37981206
    25 8jh2:g (5.7) BS01 dna ? GO:0000786 ... P04908 37981206
    26 8jh2:h (5.7) BS01 dna ? GO:0000786 ... P06899 37981206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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