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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jdl:0 (2.42) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    2 8jdl:1 (2.42) BS01 rna ? GO:0002181 ... P62701 37992713
    3 8jdl:2 (2.42) BS01 rna ? GO:0000028 ... P46782 37992713
    4 8jdl:2 (2.42) BS02 MG ? GO:0000028 ... P46782 37992713
    5 8jdl:3 (2.42) BS01 rna ? GO:0000082 ... P62753 37992713
    6 8jdl:4 (2.42) BS01 rna ? GO:0001843 ... P62081 37992713
    7 8jdl:5 (2.42) BS01 rna ? GO:0000462 ... P62241 37992713
    8 8jdl:5 (2.42) BS02 rna ? GO:0000462 ... P62241 37992713
    9 8jdl:6 (2.42) BS01 rna ? GO:0002181 ... P46781 37992713
    10 8jdl:7 (2.42) BS01 rna ? GO:0002181 ... P46783 37992713
    11 8jdl:8 (2.42) BS01 rna ? GO:0002181 ... P62280 37992713
    12 8jdl:9 (2.42) BS01 rna ? GO:0002181 ... P62277 37992713
    13 8jdl:AA (2.42) BS01 rna ? GO:0000028 ... P62263 37992713
    14 8jdl:AA (2.42) BS02 MG ? GO:0000028 ... P62263 37992713
    15 8jdl:AB (2.42) BS01 rna ? GO:0000028 ... P62841 37992713
    16 8jdl:AB (2.42) BS02 rna ? GO:0000028 ... P62841 37992713
    17 8jdl:AB (2.42) BS03 rna ? GO:0000028 ... P62841 37992713
    18 8jdl:AC (2.42) BS01 rna ? GO:0000462 ... P62249 37992713
    19 8jdl:AD (2.42) BS01 rna ? GO:0002181 ... P08708 37992713
    20 8jdl:AE (2.42) BS01 rna ? GO:0002181 ... P62269 37992713
    21 8jdl:AF (2.42) BS01 rna ? GO:0000028 ... P39019 37992713
    22 8jdl:AG (2.42) BS01 rna ? GO:0002181 ... P60866 37992713
    23 8jdl:AI (2.42) BS01 rna ? GO:0002181 ... P62244 37992713
    24 8jdl:AJ (2.42) BS01 rna ? GO:0002181 ... P62266 37992713
    25 8jdl:AK (2.42) BS01 rna ? GO:0002181 ... P62847 37992713
    26 8jdl:AL (2.42) BS01 rna ? GO:0002181 ... P62851 37992713
    27 8jdl:AM (2.42) BS01 rna ? GO:0002181 ... P62854 37992713
    28 8jdl:AM (2.42) BS02 ZN ? GO:0002181 ... P62854 37992713
    29 8jdl:AN (2.42) BS01 rna ? GO:0000028 ... P42677 37992713
    30 8jdl:AO (2.42) BS01 rna ? GO:0000028 ... P62857 37992713
    31 8jdl:AP (2.42) BS01 rna ? GO:0002181 ... P62273 37992713
    32 8jdl:AP (2.42) BS02 ZN ? GO:0002181 ... P62273 37992713
    33 8jdl:AQ (2.42) BS01 rna ? GO:0003735 ... P62861 37992713
    34 8jdl:AR (2.42) BS01 rna ? GO:0001891 ... P63244 37992713
    35 8jdl:G (2.42) BS01 rna ? GO:0002181 ... P62917 37992713
    36 8jdl:G (2.42) BS02 MG ? GO:0002181 ... P62917 37992713
    37 8jdl:G (2.42) BS03 MG ? GO:0002181 ... P62917 37992713
    38 8jdl:H (2.42) BS01 rna ? GO:0002181 ... P39023 37992713
    39 8jdl:H (2.42) BS02 MG ? GO:0002181 ... P39023 37992713
    40 8jdl:I (2.42) BS01 rna ? GO:0002181 ... P36578 37992713
    41 8jdl:I (2.42) BS02 rna ? GO:0002181 ... P36578 37992713
    42 8jdl:J (2.42) BS01 rna ? GO:0000027 ... P46777 37992713
    43 8jdl:J (2.42) BS02 rna ? GO:0000027 ... P46777 37992713
    44 8jdl:K (2.42) BS01 rna ? GO:0000027 ... Q02878 37992713
    45 8jdl:L (2.42) BS01 rna ? GO:0000463 ... P18124 37992713
    46 8jdl:L (2.42) BS02 rna ? GO:0000463 ... P18124 37992713
    47 8jdl:M (2.42) BS01 rna ? GO:0000470 ... P62424 37992713
    48 8jdl:M (2.42) BS02 rna ? GO:0000470 ... P62424 37992713
    49 8jdl:N (2.42) BS01 rna ? GO:0002181 ... P32969 37992713
    50 8jdl:N (2.42) BS02 MG ? GO:0002181 ... P32969 37992713
    51 8jdl:O (2.42) BS01 rna ? GO:0000027 ... Q96L21 37992713
    52 8jdl:O (2.42) BS02 rna ? GO:0000027 ... Q96L21 37992713
    53 8jdl:P (2.42) BS01 rna ? GO:0000027 ... P62913 37992713
    54 8jdl:P (2.42) BS02 rna ? GO:0000027 ... P62913 37992713
    55 8jdl:P (2.42) BS03 rna ? GO:0000027 ... P62913 37992713
    56 8jdl:Q (2.42) BS01 rna ? GO:0001824 ... P26373 37992713
    57 8jdl:Q (2.42) BS02 rna ? GO:0001824 ... P26373 37992713
    58 8jdl:R (2.42) BS01 rna ? GO:0002181 ... P50914 37992713
    59 8jdl:S (2.42) BS01 rna ? GO:0002181 ... P61313 37992713
    60 8jdl:S (2.42) BS02 rna ? GO:0002181 ... P61313 37992713
    61 8jdl:T (2.42) BS01 rna ? GO:0002181 ... P40429 37992713
    62 8jdl:U (2.42) BS01 rna ? GO:0002181 ... P18621 37992713
    63 8jdl:U (2.42) BS02 rna ? GO:0002181 ... P18621 37992713
    64 8jdl:V (2.42) BS01 rna ? GO:0002181 ... Q07020 37992713
    65 8jdl:V (2.42) BS02 MG ? GO:0002181 ... Q07020 37992713
    66 8jdl:V (2.42) BS03 MG ? GO:0002181 ... Q07020 37992713
    67 8jdl:W (2.42) BS01 rna ? GO:0002181 ... P84098 37992713
    68 8jdl:W (2.42) BS02 rna ? GO:0002181 ... P84098 37992713
    69 8jdl:X (2.42) BS01 rna ? GO:0002181 ... Q02543 37992713
    70 8jdl:X (2.42) BS02 rna ? GO:0002181 ... Q02543 37992713
    71 8jdl:Y (2.42) BS01 rna ? GO:0002181 ... P46778 37992713
    72 8jdl:Y (2.42) BS02 rna ? GO:0002181 ... P46778 37992713
    73 8jdl:Z (2.42) BS01 rna ? GO:0002181 ... P35268 37992713
    74 8jdl:a (2.42) BS01 rna ? GO:0000122 ... P62829 37992713
    75 8jdl:b (2.42) BS01 rna ? GO:0000027 ... P83731 37992713
    76 8jdl:c (2.42) BS01 rna ? GO:0000027 ... P62750 37992713
    77 8jdl:c (2.42) BS02 rna ? GO:0000027 ... P62750 37992713
    78 8jdl:d (2.42) BS01 rna ? GO:0002181 ... P61254 37992713
    79 8jdl:d (2.42) BS02 rna ? GO:0002181 ... P61254 37992713
    80 8jdl:e (2.42) BS01 rna ? GO:0002181 ... P61353 37992713
    81 8jdl:f (2.42) BS01 rna ? GO:0002181 ... P46776 37992713
    82 8jdl:g (2.42) BS01 rna ? GO:0002181 ... P47914 37992713
    83 8jdl:g (2.42) BS02 MG ? GO:0002181 ... P47914 37992713
    84 8jdl:h (2.42) BS01 rna ? GO:0002181 ... P62888 37992713
    85 8jdl:i (2.42) BS01 rna ? GO:0002181 ... P62899 37992713
    86 8jdl:j (2.42) BS01 rna ? GO:0002181 ... P62910 37992713
    87 8jdl:j (2.42) BS02 MG ? GO:0002181 ... P62910 37992713
    88 8jdl:k (2.42) BS01 rna ? GO:0000049 ... P18077 37992713
    89 8jdl:k (2.42) BS02 MG ? GO:0000049 ... P18077 37992713
    90 8jdl:l (2.42) BS01 rna ? GO:0002181 ... P49207 37992713
    91 8jdl:l (2.42) BS02 MG ? GO:0002181 ... P49207 37992713
    92 8jdl:m (2.42) BS01 rna ? GO:0000463 ... P42766 37992713
    93 8jdl:m (2.42) BS02 rna ? GO:0000463 ... P42766 37992713
    94 8jdl:n (2.42) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    95 8jdl:o (2.42) BS01 rna ? GO:0002181 ... P61927 37992713
    96 8jdl:o (2.42) BS02 rna ? GO:0002181 ... P61927 37992713
    97 8jdl:o (2.42) BS03 ZN ? GO:0002181 ... P61927 37992713
    98 8jdl:p (2.42) BS01 rna ? GO:0001501 ... P63173 37992713
    99 8jdl:q (2.42) BS01 rna ? GO:0002181 ... P62891 37992713
    100 8jdl:q (2.42) BS02 rna ? GO:0002181 ... P62891 37992713
    101 8jdl:r (2.42) BS01 rna ? GO:0002181 ... P62987 37992713
    102 8jdl:r (2.42) BS02 ZN ? GO:0002181 ... P62987 37992713
    103 8jdl:t (2.42) BS01 rna ? GO:0002181 ... P83881 37992713
    104 8jdl:t (2.42) BS02 ZN ? GO:0002181 ... P83881 37992713
    105 8jdl:u (2.42) BS01 rna ? GO:0002181 ... P61513 37992713
    106 8jdl:u (2.42) BS02 ZN ? GO:0002181 ... P61513 37992713
    107 8jdl:v (2.42) BS01 rna ? GO:0002181 ... P46779 37992713
    108 8jdl:x (2.42) BS01 rna ? GO:0000028 ... P08865 37992713
    109 8jdl:y (2.42) BS01 rna ? GO:0002181 ... P61247 37992713
    110 8jdl:z (2.42) BS01 rna ? GO:0002181 ... P15880 37992713
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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