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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8jdj:0 (2.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37992713
    2 8jdj:1 (2.5) BS01 rna ? GO:0002181 ... P62701 37992713
    3 8jdj:2 (2.5) BS01 rna ? GO:0000028 ... P46782 37992713
    4 8jdj:2 (2.5) BS02 MG ? GO:0000028 ... P46782 37992713
    5 8jdj:3 (2.5) BS01 rna ? GO:0000082 ... P62753 37992713
    6 8jdj:4 (2.5) BS01 rna ? GO:0001843 ... P62081 37992713
    7 8jdj:5 (2.5) BS01 rna ? GO:0000462 ... P62241 37992713
    8 8jdj:5 (2.5) BS02 rna ? GO:0000462 ... P62241 37992713
    9 8jdj:6 (2.5) BS01 rna ? GO:0002181 ... P46781 37992713
    10 8jdj:7 (2.5) BS01 rna ? GO:0002181 ... P46783 37992713
    11 8jdj:8 (2.5) BS01 rna ? GO:0002181 ... P62280 37992713
    12 8jdj:9 (2.5) BS01 rna ? GO:0002181 ... P62277 37992713
    13 8jdj:AA (2.5) BS01 rna ? GO:0000028 ... P62263 37992713
    14 8jdj:AB (2.5) BS01 rna ? GO:0000028 ... P62841 37992713
    15 8jdj:AB (2.5) BS02 rna ? GO:0000028 ... P62841 37992713
    16 8jdj:AB (2.5) BS03 rna ? GO:0000028 ... P62841 37992713
    17 8jdj:AC (2.5) BS01 rna ? GO:0000462 ... P62249 37992713
    18 8jdj:AD (2.5) BS01 rna ? GO:0002181 ... P08708 37992713
    19 8jdj:AE (2.5) BS01 rna ? GO:0002181 ... P62269 37992713
    20 8jdj:AE (2.5) BS02 rna ? GO:0002181 ... P62269 37992713
    21 8jdj:AF (2.5) BS01 rna ? GO:0000028 ... P39019 37992713
    22 8jdj:AG (2.5) BS01 rna ? GO:0002181 ... P60866 37992713
    23 8jdj:AI (2.5) BS01 rna ? GO:0002181 ... P62244 37992713
    24 8jdj:AJ (2.5) BS01 rna ? GO:0002181 ... P62266 37992713
    25 8jdj:AK (2.5) BS01 rna ? GO:0002181 ... P62847 37992713
    26 8jdj:AL (2.5) BS01 rna ? GO:0002181 ... P62851 37992713
    27 8jdj:AM (2.5) BS01 rna ? GO:0002181 ... P62854 37992713
    28 8jdj:AM (2.5) BS02 ZN ? GO:0002181 ... P62854 37992713
    29 8jdj:AN (2.5) BS01 rna ? GO:0000028 ... P42677 37992713
    30 8jdj:AO (2.5) BS01 rna ? GO:0000028 ... P62857 37992713
    31 8jdj:AP (2.5) BS01 rna ? GO:0002181 ... P62273 37992713
    32 8jdj:AP (2.5) BS02 ZN ? GO:0002181 ... P62273 37992713
    33 8jdj:AQ (2.5) BS01 rna ? GO:0003735 ... P62861 37992713
    34 8jdj:AR (2.5) BS01 rna ? GO:0001891 ... P63244 37992713
    35 8jdj:G (2.5) BS01 rna ? GO:0002181 ... P62917 37992713
    36 8jdj:G (2.5) BS02 MG ? GO:0002181 ... P62917 37992713
    37 8jdj:H (2.5) BS01 rna ? GO:0002181 ... P39023 37992713
    38 8jdj:H (2.5) BS02 MG ? GO:0002181 ... P39023 37992713
    39 8jdj:I (2.5) BS01 rna ? GO:0002181 ... P36578 37992713
    40 8jdj:I (2.5) BS02 rna ? GO:0002181 ... P36578 37992713
    41 8jdj:J (2.5) BS01 rna ? GO:0000027 ... P46777 37992713
    42 8jdj:J (2.5) BS02 rna ? GO:0000027 ... P46777 37992713
    43 8jdj:K (2.5) BS01 rna ? GO:0000027 ... Q02878 37992713
    44 8jdj:L (2.5) BS01 rna ? GO:0000463 ... P18124 37992713
    45 8jdj:L (2.5) BS02 rna ? GO:0000463 ... P18124 37992713
    46 8jdj:M (2.5) BS01 rna ? GO:0000470 ... P62424 37992713
    47 8jdj:M (2.5) BS02 rna ? GO:0000470 ... P62424 37992713
    48 8jdj:N (2.5) BS01 rna ? GO:0002181 ... P32969 37992713
    49 8jdj:N (2.5) BS02 MG ? GO:0002181 ... P32969 37992713
    50 8jdj:O (2.5) BS01 rna ? GO:0000027 ... Q96L21 37992713
    51 8jdj:O (2.5) BS02 rna ? GO:0000027 ... Q96L21 37992713
    52 8jdj:P (2.5) BS01 rna ? GO:0000027 ... P62913 37992713
    53 8jdj:P (2.5) BS02 rna ? GO:0000027 ... P62913 37992713
    54 8jdj:P (2.5) BS03 rna ? GO:0000027 ... P62913 37992713
    55 8jdj:Q (2.5) BS01 rna ? GO:0001824 ... P26373 37992713
    56 8jdj:Q (2.5) BS02 rna ? GO:0001824 ... P26373 37992713
    57 8jdj:R (2.5) BS01 rna ? GO:0002181 ... P50914 37992713
    58 8jdj:S (2.5) BS01 rna ? GO:0002181 ... P61313 37992713
    59 8jdj:S (2.5) BS02 rna ? GO:0002181 ... P61313 37992713
    60 8jdj:T (2.5) BS01 rna ? GO:0002181 ... P40429 37992713
    61 8jdj:U (2.5) BS01 rna ? GO:0002181 ... P18621 37992713
    62 8jdj:U (2.5) BS02 rna ? GO:0002181 ... P18621 37992713
    63 8jdj:V (2.5) BS01 rna ? GO:0002181 ... Q07020 37992713
    64 8jdj:V (2.5) BS02 MG ? GO:0002181 ... Q07020 37992713
    65 8jdj:V (2.5) BS03 MG ? GO:0002181 ... Q07020 37992713
    66 8jdj:W (2.5) BS01 rna ? GO:0002181 ... P84098 37992713
    67 8jdj:W (2.5) BS02 rna ? GO:0002181 ... P84098 37992713
    68 8jdj:X (2.5) BS01 rna ? GO:0002181 ... Q02543 37992713
    69 8jdj:X (2.5) BS02 rna ? GO:0002181 ... Q02543 37992713
    70 8jdj:Y (2.5) BS01 rna ? GO:0002181 ... P46778 37992713
    71 8jdj:Y (2.5) BS02 rna ? GO:0002181 ... P46778 37992713
    72 8jdj:Z (2.5) BS01 rna ? GO:0002181 ... P35268 37992713
    73 8jdj:a (2.5) BS01 rna ? GO:0000122 ... P62829 37992713
    74 8jdj:b (2.5) BS01 rna ? GO:0000027 ... P83731 37992713
    75 8jdj:c (2.5) BS01 rna ? GO:0000027 ... P62750 37992713
    76 8jdj:c (2.5) BS02 rna ? GO:0000027 ... P62750 37992713
    77 8jdj:d (2.5) BS01 rna ? GO:0002181 ... P61254 37992713
    78 8jdj:d (2.5) BS02 rna ? GO:0002181 ... P61254 37992713
    79 8jdj:e (2.5) BS01 rna ? GO:0002181 ... P61353 37992713
    80 8jdj:f (2.5) BS01 rna ? GO:0002181 ... P46776 37992713
    81 8jdj:g (2.5) BS01 rna ? GO:0002181 ... P47914 37992713
    82 8jdj:g (2.5) BS02 MG ? GO:0002181 ... P47914 37992713
    83 8jdj:h (2.5) BS01 rna ? GO:0002181 ... P62888 37992713
    84 8jdj:i (2.5) BS01 rna ? GO:0002181 ... P62899 37992713
    85 8jdj:j (2.5) BS01 rna ? GO:0002181 ... P62910 37992713
    86 8jdj:j (2.5) BS02 MG ? GO:0002181 ... P62910 37992713
    87 8jdj:k (2.5) BS01 rna ? GO:0000049 ... P18077 37992713
    88 8jdj:k (2.5) BS02 MG ? GO:0000049 ... P18077 37992713
    89 8jdj:l (2.5) BS01 rna ? GO:0002181 ... P49207 37992713
    90 8jdj:l (2.5) BS02 MG ? GO:0002181 ... P49207 37992713
    91 8jdj:m (2.5) BS01 rna ? GO:0000463 ... P42766 37992713
    92 8jdj:m (2.5) BS02 rna ? GO:0000463 ... P42766 37992713
    93 8jdj:n (2.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37992713
    94 8jdj:o (2.5) BS01 rna ? GO:0002181 ... P61927 37992713
    95 8jdj:o (2.5) BS02 rna ? GO:0002181 ... P61927 37992713
    96 8jdj:o (2.5) BS03 ZN ? GO:0002181 ... P61927 37992713
    97 8jdj:p (2.5) BS01 rna ? GO:0001501 ... P63173 37992713
    98 8jdj:q (2.5) BS01 rna ? GO:0002181 ... P62891 37992713
    99 8jdj:q (2.5) BS02 rna ? GO:0002181 ... P62891 37992713
    100 8jdj:r (2.5) BS01 rna ? GO:0002181 ... P62987 37992713
    101 8jdj:r (2.5) BS02 ZN ? GO:0002181 ... P62987 37992713
    102 8jdj:t (2.5) BS01 rna ? GO:0002181 ... P83881 37992713
    103 8jdj:t (2.5) BS02 ZN ? GO:0002181 ... P83881 37992713
    104 8jdj:u (2.5) BS01 rna ? GO:0002181 ... P61513 37992713
    105 8jdj:u (2.5) BS02 MG ? GO:0002181 ... P61513 37992713
    106 8jdj:u (2.5) BS03 ZN ? GO:0002181 ... P61513 37992713
    107 8jdj:v (2.5) BS01 rna ? GO:0002181 ... P46779 37992713
    108 8jdj:x (2.5) BS01 rna ? GO:0000028 ... P08865 37992713
    109 8jdj:y (2.5) BS01 rna ? GO:0002181 ... P61247 37992713
    110 8jdj:z (2.5) BS01 rna ? GO:0002181 ... P15880 37992713
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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