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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ity:3 (3.9) BS01 dna ? GO:0000978 ... Q92966 37165065
    2 8ity:3 (3.9) BS02 dna ? GO:0000978 ... Q92966 37165065
    3 8ity:4 (3.9) BS01 dna ? GO:0000978 ... Q5SXM2 37165065
    4 8ity:4 (3.9) BS02 dna ? GO:0000978 ... Q5SXM2 37165065
    5 8ity:A (3.9) BS01 dna 2.7.7.6 GO:0000287 ... O14802 37165065
    6 8ity:A (3.9) BS02 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    7 8ity:A (3.9) BS03 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    8 8ity:A (3.9) BS04 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    9 8ity:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    10 8ity:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    11 8ity:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    12 8ity:I (3.9) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    13 8ity:J (3.9) BS01 ZN ? GO:0000428 ... P62875 37165065
    14 8ity:L (3.9) BS01 ZN ? GO:0000428 ... P53803 37165065
    15 8ity:P (3.9) BS01 dna ? GO:0000428 ... Q9H1D9 37165065
    16 8ity:P (3.9) BS02 SF4 ? GO:0000428 ... Q9H1D9 37165065
    17 8ity:U (3.9) BS01 dna ? GO:0000785 ... P20226 37165065
    18 8ity:U (3.9) BS02 dna ? GO:0000785 ... P20226 37165065
    19 8ity:V (3.9) BS01 dna ? GO:0000126 ... Q9HAW0 37165065
    20 8ity:V (3.9) BS02 dna ? GO:0000126 ... Q9HAW0 37165065
    21 8ity:W (3.9) BS01 dna ? GO:0000126 ... A6H8Y1 37165065
    22 8ity:W (3.9) BS02 dna ? GO:0000126 ... A6H8Y1 37165065
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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