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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ir3:3 (3.5) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    2 8ir3:3 (3.5) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    3 8ir3:4 (3.5) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    4 8ir3:4 (3.5) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    5 8ir3:6 (3.5) BS01 rna ? GO:0000054 ... P56537 37491604
    6 8ir3:7 (3.5) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    7 8ir3:9 (3.5) BS01 rna ? GO:0003676 ... O00488 37491604
    8 8ir3:A (3.5) BS01 rna ? GO:0000027 ... P62913 37491604
    9 8ir3:A (3.5) BS02 rna ? GO:0000027 ... P62913 37491604
    10 8ir3:B (3.5) BS01 rna ? GO:0002181 ... P39023 37491604
    11 8ir3:C (3.5) BS01 rna ? GO:0000027 ... P46777 37491604
    12 8ir3:C (3.5) BS02 rna ? GO:0000027 ... P46777 37491604
    13 8ir3:D (3.5) BS01 rna ? GO:0002181 ... P36578 37491604
    14 8ir3:D (3.5) BS02 rna ? GO:0002181 ... P36578 37491604
    15 8ir3:E (3.5) BS01 rna ? GO:0002181 ... P62888 37491604
    16 8ir3:F (3.5) BS01 rna ? GO:0002181 ... P49207 37491604
    17 8ir3:G (3.5) BS01 rna ? GO:0000470 ... P62424 37491604
    18 8ir3:G (3.5) BS02 rna ? GO:0000470 ... P62424 37491604
    19 8ir3:H (3.5) BS01 rna ? GO:0000463 ... P42766 37491604
    20 8ir3:H (3.5) BS02 rna ? GO:0000463 ... P42766 37491604
    21 8ir3:I (3.5) BS01 rna ? GO:0002181 ... P32969 37491604
    22 8ir3:J (3.5) BS01 rna ? GO:0000460 ... O95478 37491604
    23 8ir3:K (3.5) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    24 8ir3:L (3.5) BS01 rna ? GO:0002181 ... P46776 37491604
    25 8ir3:M (3.5) BS01 rna ? GO:0002181 ... P61927 37491604
    26 8ir3:M (3.5) BS02 rna ? GO:0002181 ... P61927 37491604
    27 8ir3:O (3.5) BS01 rna ? GO:0001501 ... P63173 37491604
    28 8ir3:P (3.5) BS01 rna ? GO:0002181 ... P62891 37491604
    29 8ir3:P (3.5) BS02 rna ? GO:0002181 ... P62891 37491604
    30 8ir3:Q (3.5) BS01 rna ? GO:0001824 ... P26373 37491604
    31 8ir3:Q (3.5) BS02 rna ? GO:0001824 ... P26373 37491604
    32 8ir3:R (3.5) BS01 rna ? GO:0000027 ... Q15050 37491604
    33 8ir3:S (3.5) BS01 rna ? GO:0002181 ... P50914 37491604
    34 8ir3:T (3.5) BS01 rna ? GO:0000027 ... Q9H7B2 37491604
    35 8ir3:T (3.5) BS02 rna ? GO:0000027 ... Q9H7B2 37491604
    36 8ir3:U (3.5) BS01 rna ? GO:0002181 ... P61313 37491604
    37 8ir3:U (3.5) BS02 rna ? GO:0002181 ... P61313 37491604
    38 8ir3:V (3.5) BS01 rna ? GO:0002181 ... P40429 37491604
    39 8ir3:X (3.5) BS01 rna ? GO:0002181 ... P61513 37491604
    40 8ir3:Y (3.5) BS01 rna ? GO:0002181 ... P18621 37491604
    41 8ir3:Y (3.5) BS02 rna ? GO:0002181 ... P18621 37491604
    42 8ir3:Z (3.5) BS01 rna ? GO:0002181 ... Q07020 37491604
    43 8ir3:a (3.5) BS01 rna ? GO:0002181 ... P84098 37491604
    44 8ir3:b (3.5) BS01 rna ? GO:0002181 ... Q02543 37491604
    45 8ir3:c (3.5) BS01 rna ? GO:0002181 ... P46778 37491604
    46 8ir3:d (3.5) BS01 rna ? GO:0002181 ... P35268 37491604
    47 8ir3:e (3.5) BS01 rna ? GO:0000122 ... P62829 37491604
    48 8ir3:f (3.5) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    49 8ir3:f (3.5) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    50 8ir3:g (3.5) BS01 rna ? GO:0000027 ... P62750 37491604
    51 8ir3:g (3.5) BS02 rna ? GO:0000027 ... P62750 37491604
    52 8ir3:h (3.5) BS01 rna ? GO:0002181 ... P61254 37491604
    53 8ir3:h (3.5) BS02 rna ? GO:0002181 ... P61254 37491604
    54 8ir3:i (3.5) BS01 rna ? GO:0002181 ... P61353 37491604
    55 8ir3:j (3.5) BS01 rna ? GO:0002181 ... P62899 37491604
    56 8ir3:k (3.5) BS01 rna ? GO:0002181 ... P62910 37491604
    57 8ir3:l (3.5) BS01 rna ? GO:0002181 ... P46779 37491604
    58 8ir3:m (3.5) BS01 rna ? GO:0002181 ... P62917 37491604
    59 8ir3:n (3.5) BS01 rna ? GO:0000049 ... P18077 37491604
    60 8ir3:o (3.5) BS01 rna ? GO:0000027 ... Q02878 37491604
    61 8ir3:p (3.5) BS01 rna ? GO:0000463 ... P18124 37491604
    62 8ir3:q (3.5) BS01 rna ? GO:0000463 ... O00541 37491604
    63 8ir3:q (3.5) BS02 rna ? GO:0000463 ... O00541 37491604
    64 8ir3:s (3.5) BS01 rna ? GO:0000462 ... O76021 37491604
    65 8ir3:t (3.5) BS01 rna ? GO:0000463 ... Q9BYG3 37491604
    66 8ir3:u (3.5) BS01 peptide ? GO:0003723 ... Q9BVP2 37491604
    67 8ir3:u (3.5) BS02 rna ? GO:0003723 ... Q9BVP2 37491604
    68 8ir3:v (3.5) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    69 8ir3:w (3.5) BS01 rna ? GO:0003723 ... Q13823 37491604
    70 8ir3:w (3.5) BS02 GTP ? GO:0003723 ... Q13823 37491604
    71 8ir3:y (3.5) BS01 rna ? GO:0002181 ... P30050 37491604
    72 8ir3:z (3.5) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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