Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 88 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8gzu:0C (4.18) BS01 FES ? GO:0005737 ... I7M8P0 37248254
    2 8gzu:0C (4.18) BS02 FES ? GO:0005737 ... I7M8P0 37248254
    3 8gzu:0F (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    4 8gzu:0H (4.18) BS01 peptide N/A N/A N/A 37248254
    5 8gzu:26 (4.18) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    6 8gzu:26 (4.18) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    7 8gzu:27 (4.18) BS01 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    8 8gzu:29 (4.18) BS01 ZN ? GO:0005740 ... Q23FF5 37248254
    9 8gzu:47 (4.18) BS01 FES ? GO:0005737 ... I7M8P0 37248254
    10 8gzu:47 (4.18) BS02 FES ? GO:0005737 ... I7M8P0 37248254
    11 8gzu:50 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    12 8gzu:52 (4.18) BS01 peptide N/A N/A N/A 37248254
    13 8gzu:81 (4.18) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    14 8gzu:81 (4.18) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    15 8gzu:82 (4.18) BS01 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    16 8gzu:84 (4.18) BS01 ZN ? GO:0005740 ... Q23FF5 37248254
    17 8gzu:84 (4.18) BS02 ZN ? GO:0005740 ... Q23FF5 37248254
    18 8gzu:A9 (4.18) BS01 NDP ? GO:0005739 ... I7MLH2 37248254
    19 8gzu:B4 (4.18) BS01 ADP N/A N/A N/A 37248254
    20 8gzu:B8 (4.18) BS01 ADP ? N/A I7M855 37248254
    21 8gzu:C1 (4.18) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    22 8gzu:C1 (4.18) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    23 8gzu:C2 (4.18) BS01 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    24 8gzu:FS (4.18) BS01 FES ? GO:0005737 ... I7M8P0 37248254
    25 8gzu:FS (4.18) BS02 FES ? GO:0005737 ... I7M8P0 37248254
    26 8gzu:FX (4.18) BS01 FES ? GO:0051536 ... Q22W11 37248254
    27 8gzu:QC (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    28 8gzu:QC (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    29 8gzu:QD (4.18) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    30 8gzu:QD (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    31 8gzu:QE (4.18) BS01 FES ? GO:0005739 ... I7MIC7 37248254
    32 8gzu:Qc (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    33 8gzu:Qc (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    34 8gzu:Qd (4.18) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    35 8gzu:Qd (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    36 8gzu:Qe (4.18) BS01 FES ? GO:0005739 ... I7MIC7 37248254
    37 8gzu:S1 (4.18) BS01 SF4 ? GO:0003954 ... Q23KA9 37248254
    38 8gzu:S1 (4.18) BS02 SF4 ? GO:0003954 ... Q23KA9 37248254
    39 8gzu:S1 (4.18) BS03 FES ? GO:0003954 ... Q23KA9 37248254
    40 8gzu:S7 (4.18) BS01 SF4 1.6.5.3 GO:0005739 ... Q951B4 37248254
    41 8gzu:S8 (4.18) BS01 SF4 ? GO:0003954 ... I7MDW5 37248254
    42 8gzu:S8 (4.18) BS02 SF4 ? GO:0003954 ... I7MDW5 37248254
    43 8gzu:SA (4.18) BS01 FAD 1.3.5.1 GO:0005743 ... Q23DI3 37248254
    44 8gzu:SB (4.18) BS01 FES 1.3.5.1 GO:0005743 ... I7M403 37248254
    45 8gzu:SB (4.18) BS02 SF4 1.3.5.1 GO:0005743 ... I7M403 37248254
    46 8gzu:SB (4.18) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    47 8gzu:V1 (4.18) BS01 SF4 7.1.1.2 GO:0005739 ... Q23KE4 37248254
    48 8gzu:V1 (4.18) BS02 FMN 7.1.1.2 GO:0005739 ... Q23KE4 37248254
    49 8gzu:V2 (4.18) BS01 FES ? GO:0003954 ... I7MEP0 37248254
    50 8gzu:VB (4.18) BS01 ZN ? GO:0005740 ... Q23FF5 37248254
    51 8gzu:Y5 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    52 8gzu:Z1 (4.18) BS01 peptide N/A N/A N/A 37248254
    53 8gzu:a9 (4.18) BS01 NDP ? GO:0005739 ... I7MLH2 37248254
    54 8gzu:b4 (4.18) BS01 ADP N/A N/A N/A 37248254
    55 8gzu:b8 (4.18) BS01 ADP ? N/A I7M855 37248254
    56 8gzu:c1 (4.18) BS01 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    57 8gzu:c1 (4.18) BS02 HEA 7.1.1.9 GO:0004129 ... Q950Y4 37248254
    58 8gzu:c2 (4.18) BS01 CU 7.1.1.9 GO:0004129 ... Q950Y9 37248254
    59 8gzu:fs (4.18) BS01 FES ? GO:0005737 ... I7M8P0 37248254
    60 8gzu:fs (4.18) BS02 FES ? GO:0005737 ... I7M8P0 37248254
    61 8gzu:fx (4.18) BS01 FES ? GO:0051536 ... Q22W11 37248254
    62 8gzu:qC (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    63 8gzu:qC (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    64 8gzu:qD (4.18) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    65 8gzu:qD (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    66 8gzu:qE (4.18) BS01 FES ? GO:0005739 ... I7MIC7 37248254
    67 8gzu:qc (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    68 8gzu:qc (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    69 8gzu:qd (4.18) BS01 peptide ? GO:0005739 ... Q24IM5 37248254
    70 8gzu:qd (4.18) BS02 HEC ? GO:0005739 ... Q24IM5 37248254
    71 8gzu:qe (4.18) BS01 FES ? GO:0005739 ... I7MIC7 37248254
    72 8gzu:s1 (4.18) BS01 SF4 ? GO:0003954 ... Q23KA9 37248254
    73 8gzu:s1 (4.18) BS02 SF4 ? GO:0003954 ... Q23KA9 37248254
    74 8gzu:s1 (4.18) BS03 FES ? GO:0003954 ... Q23KA9 37248254
    75 8gzu:s7 (4.18) BS01 SF4 1.6.5.3 GO:0005739 ... Q951B4 37248254
    76 8gzu:s8 (4.18) BS01 SF4 ? GO:0003954 ... I7MDW5 37248254
    77 8gzu:s8 (4.18) BS02 SF4 ? GO:0003954 ... I7MDW5 37248254
    78 8gzu:sa (4.18) BS01 FAD 1.3.5.1 GO:0005743 ... Q23DI3 37248254
    79 8gzu:sb (4.18) BS01 FES 1.3.5.1 GO:0005743 ... I7M403 37248254
    80 8gzu:sb (4.18) BS02 SF4 1.3.5.1 GO:0005743 ... I7M403 37248254
    81 8gzu:sb (4.18) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    82 8gzu:v1 (4.18) BS01 SF4 7.1.1.2 GO:0005739 ... Q23KE4 37248254
    83 8gzu:v1 (4.18) BS02 FMN 7.1.1.2 GO:0005739 ... Q23KE4 37248254
    84 8gzu:v2 (4.18) BS01 FES ? GO:0003954 ... I7MEP0 37248254
    85 8gzu:vb (4.18) BS01 ZN ? GO:0005740 ... Q23FF5 37248254
    86 8gzu:vb (4.18) BS02 ZN ? GO:0005740 ... Q23FF5 37248254
    87 8gzu:y5 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    88 8gzu:z1 (4.18) BS01 peptide N/A N/A N/A 37248254
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417