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BioLiP
Download all results in tab-seperated text for 129 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8glp:LA (1.67) BS01 rna N/A GO:0003723 ... N/A 37020024
    2 8glp:LA (1.67) BS02 rna N/A GO:0003723 ... N/A 37020024
    3 8glp:LB (1.67) BS01 rna ? GO:0002181 ... P39023 37020024
    4 8glp:LC (1.67) BS01 rna ? GO:0002181 ... P36578 37020024
    5 8glp:LC (1.67) BS02 rna ? GO:0002181 ... P36578 37020024
    6 8glp:LC (1.67) BS03 MG ? GO:0002181 ... P36578 37020024
    7 8glp:LD (1.67) BS01 rna ? GO:0000027 ... P46777 37020024
    8 8glp:LD (1.67) BS02 rna ? GO:0000027 ... P46777 37020024
    9 8glp:LD (1.67) BS03 MG ? GO:0000027 ... P46777 37020024
    10 8glp:LD (1.67) BS04 MG ? GO:0000027 ... P46777 37020024
    11 8glp:LE (1.67) BS01 rna ? GO:0000027 ... Q02878 37020024
    12 8glp:LF (1.67) BS01 rna ? GO:0000463 ... P18124 37020024
    13 8glp:LF (1.67) BS02 rna ? GO:0000463 ... P18124 37020024
    14 8glp:LG (1.67) BS01 rna ? GO:0000470 ... P62424 37020024
    15 8glp:LG (1.67) BS02 rna ? GO:0000470 ... P62424 37020024
    16 8glp:LH (1.67) BS01 rna ? GO:0002181 ... P32969 37020024
    17 8glp:LH (1.67) BS02 MG ? GO:0002181 ... P32969 37020024
    18 8glp:LI (1.67) BS01 rna ? GO:0000027 ... P27635 37020024
    19 8glp:LI (1.67) BS02 rna ? GO:0000027 ... P27635 37020024
    20 8glp:LJ (1.67) BS01 rna ? GO:0000027 ... P62913 37020024
    21 8glp:LJ (1.67) BS02 rna ? GO:0000027 ... P62913 37020024
    22 8glp:LJ (1.67) BS03 rna ? GO:0000027 ... P62913 37020024
    23 8glp:LL (1.67) BS01 rna ? GO:0001824 ... P26373 37020024
    24 8glp:LL (1.67) BS02 rna ? GO:0001824 ... P26373 37020024
    25 8glp:LL (1.67) BS03 MG ? GO:0001824 ... P26373 37020024
    26 8glp:LL (1.67) BS04 MG ? GO:0001824 ... P26373 37020024
    27 8glp:LM (1.67) BS01 rna ? GO:0002181 ... P50914 37020024
    28 8glp:LN (1.67) BS01 rna ? GO:0002181 ... P61313 37020024
    29 8glp:LN (1.67) BS02 rna ? GO:0002181 ... P61313 37020024
    30 8glp:LO (1.67) BS01 rna ? GO:0002181 ... P40429 37020024
    31 8glp:LO (1.67) BS02 MG ? GO:0002181 ... P40429 37020024
    32 8glp:LO (1.67) BS03 MG ? GO:0002181 ... P40429 37020024
    33 8glp:LP (1.67) BS01 rna ? GO:0002181 ... P18621 37020024
    34 8glp:LP (1.67) BS02 rna ? GO:0002181 ... P18621 37020024
    35 8glp:LP (1.67) BS03 MG ? GO:0002181 ... P18621 37020024
    36 8glp:LP (1.67) BS04 MG ? GO:0002181 ... P18621 37020024
    37 8glp:LQ (1.67) BS01 rna ? GO:0002181 ... Q07020 37020024
    38 8glp:LQ (1.67) BS02 MG ? GO:0002181 ... Q07020 37020024
    39 8glp:LR (1.67) BS01 rna ? GO:0002181 ... P84098 37020024
    40 8glp:LR (1.67) BS02 rna ? GO:0002181 ... P84098 37020024
    41 8glp:LS (1.67) BS01 rna ? GO:0002181 ... Q02543 37020024
    42 8glp:LS (1.67) BS02 rna ? GO:0002181 ... Q02543 37020024
    43 8glp:LS (1.67) BS03 MG ? GO:0002181 ... Q02543 37020024
    44 8glp:LT (1.67) BS01 rna ? GO:0002181 ... P46778 37020024
    45 8glp:LT (1.67) BS02 rna ? GO:0002181 ... P46778 37020024
    46 8glp:LU (1.67) BS01 rna ? GO:0002181 ... P35268 37020024
    47 8glp:LV (1.67) BS01 rna ? GO:0000122 ... P62829 37020024
    48 8glp:LW (1.67) BS01 rna ? GO:0000027 ... P83731 37020024
    49 8glp:LW (1.67) BS02 rna ? GO:0000027 ... P83731 37020024
    50 8glp:LX (1.67) BS01 rna ? GO:0000027 ... P62750 37020024
    51 8glp:LX (1.67) BS02 rna ? GO:0000027 ... P62750 37020024
    52 8glp:LY (1.67) BS01 rna ? GO:0002181 ... P61254 37020024
    53 8glp:LY (1.67) BS02 rna ? GO:0002181 ... P61254 37020024
    54 8glp:LY (1.67) BS03 MG ? GO:0002181 ... P61254 37020024
    55 8glp:LZ (1.67) BS01 rna ? GO:0002181 ... P61353 37020024
    56 8glp:La (1.67) BS01 rna ? GO:0002181 ... P46776 37020024
    57 8glp:Lb (1.67) BS01 rna ? GO:0002181 ... P47914 37020024
    58 8glp:Lc (1.67) BS01 rna ? GO:0002181 ... P62888 37020024
    59 8glp:Ld (1.67) BS01 rna ? GO:0002181 ... P62899 37020024
    60 8glp:Ld (1.67) BS02 MG ? GO:0002181 ... P62899 37020024
    61 8glp:Le (1.67) BS01 rna ? GO:0002181 ... P62910 37020024
    62 8glp:Lf (1.67) BS01 rna ? GO:0000049 ... P18077 37020024
    63 8glp:Lg (1.67) BS01 rna ? GO:0002181 ... P49207 37020024
    64 8glp:Lg (1.67) BS02 ZN ? GO:0002181 ... P49207 37020024
    65 8glp:Lh (1.67) BS01 rna ? GO:0000463 ... P42766 37020024
    66 8glp:Lh (1.67) BS02 rna ? GO:0000463 ... P42766 37020024
    67 8glp:Li (1.67) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    68 8glp:Lj (1.67) BS01 rna ? GO:0002181 ... P61927 37020024
    69 8glp:Lj (1.67) BS02 rna ? GO:0002181 ... P61927 37020024
    70 8glp:Lj (1.67) BS03 ZN ? GO:0002181 ... P61927 37020024
    71 8glp:Lk (1.67) BS01 rna ? GO:0001501 ... P63173 37020024
    72 8glp:Ll (1.67) BS01 rna ? GO:0002181 ... P62891 37020024
    73 8glp:Ll (1.67) BS02 rna ? GO:0002181 ... P62891 37020024
    74 8glp:Lm (1.67) BS01 rna N/A GO:0003735 ... N/A 37020024
    75 8glp:Lm (1.67) BS02 ZN N/A GO:0003735 ... N/A 37020024
    76 8glp:Lo (1.67) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    77 8glp:Lo (1.67) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    78 8glp:Lo (1.67) BS03 3H3 ? GO:0003735 ... J3KQN4 37020024
    79 8glp:Lo (1.67) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    80 8glp:Lo (1.67) BS05 MG ? GO:0003735 ... J3KQN4 37020024
    81 8glp:Lp (1.67) BS01 rna ? GO:0002181 ... P61513 37020024
    82 8glp:Lp (1.67) BS02 ZN ? GO:0002181 ... P61513 37020024
    83 8glp:Lp (1.67) BS03 MG ? GO:0002181 ... P61513 37020024
    84 8glp:Lr (1.67) BS01 rna ? GO:0002181 ... P46779 37020024
    85 8glp:Lr (1.67) BS02 MG ? GO:0002181 ... P46779 37020024
    86 8glp:SA (1.67) BS01 rna ? GO:0000028 ... P08865 37020024
    87 8glp:SB (1.67) BS01 rna ? GO:0002181 ... P61247 37020024
    88 8glp:SC (1.67) BS01 rna ? GO:0002181 ... P15880 37020024
    89 8glp:SD (1.67) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    90 8glp:SE (1.67) BS01 rna ? GO:0002181 ... P62701 37020024
    91 8glp:SF (1.67) BS01 rna ? GO:0000028 ... P46782 37020024
    92 8glp:SF (1.67) BS02 rna ? GO:0000028 ... P46782 37020024
    93 8glp:SF (1.67) BS03 MG ? GO:0000028 ... P46782 37020024
    94 8glp:SG (1.67) BS01 rna ? GO:0000082 ... P62753 37020024
    95 8glp:SH (1.67) BS01 rna ? GO:0001843 ... P62081 37020024
    96 8glp:SI (1.67) BS01 rna ? GO:0000462 ... P62241 37020024
    97 8glp:SI (1.67) BS02 rna ? GO:0000462 ... P62241 37020024
    98 8glp:SJ (1.67) BS01 rna ? GO:0002181 ... P46781 37020024
    99 8glp:SK (1.67) BS01 rna ? GO:0002181 ... P46783 37020024
    100 8glp:SL (1.67) BS01 rna ? GO:0002181 ... P62280 37020024
    101 8glp:SM (1.67) BS01 rna ? GO:0002181 ... P25398 37020024
    102 8glp:SN (1.67) BS01 rna ? GO:0002181 ... P62277 37020024
    103 8glp:SN (1.67) BS02 rna ? GO:0002181 ... P62277 37020024
    104 8glp:SO (1.67) BS01 rna ? GO:0000028 ... P62263 37020024
    105 8glp:SP (1.67) BS01 rna ? GO:0000028 ... P62841 37020024
    106 8glp:SP (1.67) BS02 rna ? GO:0000028 ... P62841 37020024
    107 8glp:SQ (1.67) BS01 rna ? GO:0000462 ... P62249 37020024
    108 8glp:SR (1.67) BS01 rna ? GO:0002181 ... P08708 37020024
    109 8glp:SS (1.67) BS01 rna ? GO:0002181 ... P62269 37020024
    110 8glp:SS (1.67) BS02 rna ? GO:0002181 ... P62269 37020024
    111 8glp:SS (1.67) BS03 rna ? GO:0002181 ... P62269 37020024
    112 8glp:ST (1.67) BS01 rna ? GO:0000028 ... P39019 37020024
    113 8glp:SU (1.67) BS01 rna ? GO:0002181 ... P60866 37020024
    114 8glp:SW (1.67) BS01 rna ? GO:0002181 ... P62244 37020024
    115 8glp:SX (1.67) BS01 rna N/A GO:0003735 ... N/A 37020024
    116 8glp:SY (1.67) BS01 rna ? GO:0002181 ... P62847 37020024
    117 8glp:SZ (1.67) BS01 rna ? GO:0002181 ... P62851 37020024
    118 8glp:SZ (1.67) BS02 rna ? GO:0002181 ... P62851 37020024
    119 8glp:Sa (1.67) BS01 rna ? GO:0002181 ... P62854 37020024
    120 8glp:Sa (1.67) BS02 ZN ? GO:0002181 ... P62854 37020024
    121 8glp:Sb (1.67) BS01 rna ? GO:0000028 ... P42677 37020024
    122 8glp:Sc (1.67) BS01 rna ? GO:0000028 ... P62857 37020024
    123 8glp:Sd (1.67) BS01 rna ? GO:0002181 ... P62273 37020024
    124 8glp:Sd (1.67) BS02 ZN ? GO:0002181 ... P62273 37020024
    125 8glp:Sd (1.67) BS03 MG ? GO:0002181 ... P62273 37020024
    126 8glp:Se (1.67) BS01 rna ? GO:0002181 ... P62861 37020024
    127 8glp:Sf (1.67) BS01 rna ? GO:0002181 ... P62979 37020024
    128 8glp:Sf (1.67) BS02 ZN ? GO:0002181 ... P62979 37020024
    129 8glp:Sg (1.67) BS01 rna ? GO:0001891 ... P63244 37020024
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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