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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g7p:1 (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    2 8g7p:2 (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    3 8g7p:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 38538914
    4 8g7p:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 38538914
    5 8g7p:4 (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    6 8g7p:5 (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    7 8g7p:6 (2.9) BS01 rna ? GO:0003735 ... B7MGC4 38538914
    8 8g7p:6 (2.9) BS02 MG ? GO:0003735 ... B7MGC4 38538914
    9 8g7p:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 38538914
    10 8g7p:8 (2.9) BS01 rna ? GO:0003735 ... A0A0E2L017 38538914
    11 8g7p:8 (2.9) BS02 ZN ? GO:0003735 ... A0A0E2L017 38538914
    12 8g7p:C (2.9) BS01 rna ? GO:0000027 ... P60422 38538914
    13 8g7p:D (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    14 8g7p:E (2.9) BS01 rna ? GO:0003735 ... A1AGK6 38538914
    15 8g7p:E (2.9) BS02 MG ? GO:0003735 ... A1AGK6 38538914
    16 8g7p:F (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    17 8g7p:F (2.9) BS02 rna N/A GO:0003735 ... N/A 38538914
    18 8g7p:F (2.9) BS03 rna N/A GO:0003735 ... N/A 38538914
    19 8g7p:G (2.9) BS01 rna ? GO:0002181 ... C3SR17 38538914
    20 8g7p:H (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    21 8g7p:J (2.9) BS01 rna ? GO:0000027 ... P0A7J7 38538914
    22 8g7p:L (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    23 8g7p:M (2.9) BS01 rna ? GO:0003735 ... S1NW45 38538914
    24 8g7p:N (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    25 8g7p:N (2.9) BS02 MG N/A GO:0003735 ... N/A 38538914
    26 8g7p:N (2.9) BS03 MG N/A GO:0003735 ... N/A 38538914
    27 8g7p:O (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    28 8g7p:P (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    29 8g7p:Q (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    30 8g7p:Q (2.9) BS02 rna N/A GO:0003735 ... N/A 38538914
    31 8g7p:R (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    32 8g7p:R (2.9) BS02 rna N/A GO:0003735 ... N/A 38538914
    33 8g7p:R (2.9) BS03 MG N/A GO:0003735 ... N/A 38538914
    34 8g7p:S (2.9) BS01 rna ? GO:0000027 ... B7MAS6 38538914
    35 8g7p:T (2.9) BS01 rna N/A GO:0003723 ... N/A 38538914
    36 8g7p:U (2.9) BS01 rna ? GO:0002181 ... P61175 38538914
    37 8g7p:U (2.9) BS02 MG ? GO:0002181 ... P61175 38538914
    38 8g7p:V (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    39 8g7p:W (2.9) BS01 rna N/A GO:0003723 ... N/A 38538914
    40 8g7p:X (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    41 8g7p:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 38538914
    42 8g7p:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 38538914
    43 8g7p:Z (2.9) BS01 rna ? GO:0003735 ... A0A1X3JA73 38538914
    44 8g7p:b (2.9) BS01 rna ? GO:0000028 ... J7QM75 38538914
    45 8g7p:c (2.9) BS01 rna ? GO:0003676 ... B7MCS9 38538914
    46 8g7p:c (2.9) BS02 rna ? GO:0003676 ... B7MCS9 38538914
    47 8g7p:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 38538914
    48 8g7p:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 38538914
    49 8g7p:f (2.9) BS01 rna ? GO:0000028 ... C3SFQ7 38538914
    50 8g7p:g (2.9) BS01 rna ? GO:0003723 ... P02359 38538914
    51 8g7p:g (2.9) BS02 rna ? GO:0003723 ... P02359 38538914
    52 8g7p:h (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    53 8g7p:i (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    54 8g7p:i (2.9) BS02 rna N/A GO:0003735 ... N/A 38538914
    55 8g7p:j (2.9) BS01 rna N/A GO:0003723 ... N/A 38538914
    56 8g7p:j (2.9) BS02 MG N/A GO:0003723 ... N/A 38538914
    57 8g7p:k (2.9) BS01 rna ? GO:0003735 ... A0A0H3PWX2 38538914
    58 8g7p:l (2.9) BS01 rna ? GO:0000049 ... A0A0F1AUC4 38538914
    59 8g7p:m (2.9) BS01 rna ? GO:0000049 ... A0A7U9IV78 38538914
    60 8g7p:m (2.9) BS02 rna ? GO:0000049 ... A0A7U9IV78 38538914
    61 8g7p:n (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    62 8g7p:o (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    63 8g7p:o (2.9) BS02 rna N/A GO:0003735 ... N/A 38538914
    64 8g7p:p (2.9) BS01 rna ? GO:0000028 ... C3SYP2 38538914
    65 8g7p:q (2.9) BS01 rna N/A GO:0003735 ... N/A 38538914
    66 8g7p:r (2.9) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38538914
    67 8g7p:s (2.9) BS01 rna N/A GO:0003723 ... N/A 38538914
    68 8g7p:t (2.9) BS01 rna ? GO:0000028 ... C3TRH7 38538914
    69 8g7p:u (2.9) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38538914
    70 8g7p:z (2.9) BS01 rna ? GO:0003746 ... E2QJ06 38538914
    71 8g7p:z (2.9) BS02 rna ? GO:0003746 ... E2QJ06 38538914
    72 8g7p:z (2.9) BS03 ILE ? GO:0003746 ... E2QJ06 38538914
    73 8g7p:z (2.9) BS04 MG ? GO:0003746 ... E2QJ06 38538914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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