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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g6y:0 (2.09) BS01 rna ? GO:0000027 ... P0A7N9 37396857
    2 8g6y:1 (2.09) BS01 rna ? GO:0002181 ... P0A7P5 37396857
    3 8g6y:2 (2.09) BS01 rna ? GO:0002181 ... P0A7Q1 37396857
    4 8g6y:3 (2.09) BS01 rna ? GO:0002181 ... P0A7Q6 37396857
    5 8g6y:3 (2.09) BS02 ZN ? GO:0002181 ... P0A7Q6 37396857
    6 8g6y:4 (2.09) BS01 rna ? GO:0002181 ... P0A7M9 37396857
    7 8g6y:4 (2.09) BS02 ZN ? GO:0002181 ... P0A7M9 37396857
    8 8g6y:c (2.09) BS01 rna ? GO:0000027 ... P60422 37396857
    9 8g6y:d (2.09) BS01 rna ? GO:0000027 ... P60438 37396857
    10 8g6y:e (2.09) BS01 rna ? GO:0001070 ... P60723 37396857
    11 8g6y:f (2.09) BS01 rna ? GO:0000027 ... P62399 37396857
    12 8g6y:f (2.09) BS02 rna ? GO:0000027 ... P62399 37396857
    13 8g6y:f (2.09) BS03 rna ? GO:0000027 ... P62399 37396857
    14 8g6y:g (2.09) BS01 rna ? GO:0000027 ... P0AG55 37396857
    15 8g6y:h (2.09) BS01 rna ? GO:0002181 ... P0A7R1 37396857
    16 8g6y:i (2.09) BS01 rna ? GO:0002181 ... P0AA10 37396857
    17 8g6y:j (2.09) BS01 rna ? GO:0002181 ... P0ADY3 37396857
    18 8g6y:k (2.09) BS01 rna ? GO:0002181 ... P02413 37396857
    19 8g6y:l (2.09) BS01 rna ? GO:0000027 ... P0ADY7 37396857
    20 8g6y:l (2.09) BS02 rna ? GO:0000027 ... P0ADY7 37396857
    21 8g6y:m (2.09) BS01 rna ? GO:0000027 ... P0AG44 37396857
    22 8g6y:n (2.09) BS01 rna ? GO:0002181 ... P0C018 37396857
    23 8g6y:n (2.09) BS02 rna ? GO:0002181 ... P0C018 37396857
    24 8g6y:o (2.09) BS01 rna ? GO:0000027 ... P0A7K6 37396857
    25 8g6y:p (2.09) BS01 rna ? GO:0000027 ... P0A7L3 37396857
    26 8g6y:q (2.09) BS01 rna ? GO:0002181 ... P0AG48 37396857
    27 8g6y:r (2.09) BS01 rna ? GO:0002181 ... P61175 37396857
    28 8g6y:s (2.09) BS01 rna ? GO:0000027 ... P0ADZ0 37396857
    29 8g6y:t (2.09) BS01 rna ? GO:0000027 ... P60624 37396857
    30 8g6y:u (2.09) BS01 rna ? GO:0000027 ... P68919 37396857
    31 8g6y:v (2.09) BS01 rna ? GO:0000027 ... P0A7L8 37396857
    32 8g6y:v (2.09) BS02 rna ? GO:0000027 ... P0A7L8 37396857
    33 8g6y:w (2.09) BS01 rna ? GO:0000027 ... P0A7M2 37396857
    34 8g6y:x (2.09) BS01 rna ? GO:0000027 ... P0A7M6 37396857
    35 8g6y:y (2.09) BS01 rna ? GO:0000027 ... P0AG51 37396857
    36 8g6y:y (2.09) BS02 rna ? GO:0000027 ... P0AG51 37396857
    37 8g6y:z (2.09) BS01 rna ? GO:0000027 ... P0A7N4 37396857
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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