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BioLiP
Download all results in tab-seperated text for 125 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8g60:EF (2.54) BS01 rna 3.6.5.- GO:0000049 ... P68104 37020024
    2 8g60:EF (2.54) BS02 rna 3.6.5.- GO:0000049 ... P68104 37020024
    3 8g60:EF (2.54) BS03 PHE 3.6.5.- GO:0000049 ... P68104 37020024
    4 8g60:EF (2.54) BS04 GSP 3.6.5.- GO:0000049 ... P68104 37020024
    5 8g60:EF (2.54) BS05 ZIY 3.6.5.- GO:0000049 ... P68104 37020024
    6 8g60:EF (2.54) BS06 MG 3.6.5.- GO:0000049 ... P68104 37020024
    7 8g60:LA (2.54) BS01 rna N/A GO:0003723 ... N/A 37020024
    8 8g60:LA (2.54) BS02 rna N/A GO:0003723 ... N/A 37020024
    9 8g60:LA (2.54) BS03 MG N/A GO:0003723 ... N/A 37020024
    10 8g60:LB (2.54) BS01 rna ? GO:0002181 ... P39023 37020024
    11 8g60:LC (2.54) BS01 rna ? GO:0002181 ... P36578 37020024
    12 8g60:LC (2.54) BS02 rna ? GO:0002181 ... P36578 37020024
    13 8g60:LD (2.54) BS01 rna ? GO:0000027 ... P46777 37020024
    14 8g60:LD (2.54) BS02 rna ? GO:0000027 ... P46777 37020024
    15 8g60:LE (2.54) BS01 rna ? GO:0000027 ... Q02878 37020024
    16 8g60:LF (2.54) BS01 rna ? GO:0000463 ... P18124 37020024
    17 8g60:LF (2.54) BS02 rna ? GO:0000463 ... P18124 37020024
    18 8g60:LG (2.54) BS01 rna ? GO:0000470 ... P62424 37020024
    19 8g60:LG (2.54) BS02 rna ? GO:0000470 ... P62424 37020024
    20 8g60:LH (2.54) BS01 rna ? GO:0002181 ... P32969 37020024
    21 8g60:LI (2.54) BS01 rna ? GO:0000027 ... P27635 37020024
    22 8g60:LI (2.54) BS02 rna ? GO:0000027 ... P27635 37020024
    23 8g60:LI (2.54) BS03 rna ? GO:0000027 ... P27635 37020024
    24 8g60:LI (2.54) BS04 MG ? GO:0000027 ... P27635 37020024
    25 8g60:LJ (2.54) BS01 rna ? GO:0000027 ... P62913 37020024
    26 8g60:LJ (2.54) BS02 rna ? GO:0000027 ... P62913 37020024
    27 8g60:LJ (2.54) BS03 rna ? GO:0000027 ... P62913 37020024
    28 8g60:LK (2.54) BS01 rna ? GO:0002181 ... P30050 37020024
    29 8g60:LL (2.54) BS01 rna ? GO:0001824 ... P26373 37020024
    30 8g60:LL (2.54) BS02 rna ? GO:0001824 ... P26373 37020024
    31 8g60:LL (2.54) BS03 MG ? GO:0001824 ... P26373 37020024
    32 8g60:LM (2.54) BS01 rna ? GO:0002181 ... P50914 37020024
    33 8g60:LN (2.54) BS01 rna ? GO:0002181 ... P61313 37020024
    34 8g60:LN (2.54) BS02 rna ? GO:0002181 ... P61313 37020024
    35 8g60:LO (2.54) BS01 rna ? GO:0002181 ... P40429 37020024
    36 8g60:LP (2.54) BS01 rna ? GO:0002181 ... P18621 37020024
    37 8g60:LP (2.54) BS02 rna ? GO:0002181 ... P18621 37020024
    38 8g60:LQ (2.54) BS01 rna ? GO:0002181 ... Q07020 37020024
    39 8g60:LR (2.54) BS01 rna ? GO:0002181 ... P84098 37020024
    40 8g60:LR (2.54) BS02 rna ? GO:0002181 ... P84098 37020024
    41 8g60:LS (2.54) BS01 rna ? GO:0002181 ... Q02543 37020024
    42 8g60:LS (2.54) BS02 rna ? GO:0002181 ... Q02543 37020024
    43 8g60:LT (2.54) BS01 rna ? GO:0002181 ... P46778 37020024
    44 8g60:LT (2.54) BS02 rna ? GO:0002181 ... P46778 37020024
    45 8g60:LU (2.54) BS01 rna ? GO:0002181 ... P35268 37020024
    46 8g60:LV (2.54) BS01 rna ? GO:0000122 ... P62829 37020024
    47 8g60:LW (2.54) BS01 rna ? GO:0000027 ... P83731 37020024
    48 8g60:LW (2.54) BS02 rna ? GO:0000027 ... P83731 37020024
    49 8g60:LX (2.54) BS01 rna ? GO:0000027 ... P62750 37020024
    50 8g60:LX (2.54) BS02 rna ? GO:0000027 ... P62750 37020024
    51 8g60:LY (2.54) BS01 rna ? GO:0002181 ... P61254 37020024
    52 8g60:LY (2.54) BS02 rna ? GO:0002181 ... P61254 37020024
    53 8g60:LZ (2.54) BS01 rna ? GO:0002181 ... P61353 37020024
    54 8g60:La (2.54) BS01 rna ? GO:0002181 ... P46776 37020024
    55 8g60:Lb (2.54) BS01 rna ? GO:0002181 ... P47914 37020024
    56 8g60:Lc (2.54) BS01 rna ? GO:0002181 ... P62888 37020024
    57 8g60:Ld (2.54) BS01 rna ? GO:0002181 ... P62899 37020024
    58 8g60:Le (2.54) BS01 rna ? GO:0002181 ... P62910 37020024
    59 8g60:Le (2.54) BS02 MG ? GO:0002181 ... P62910 37020024
    60 8g60:Lf (2.54) BS01 rna ? GO:0000049 ... P18077 37020024
    61 8g60:Lf (2.54) BS02 MG ? GO:0000049 ... P18077 37020024
    62 8g60:Lg (2.54) BS01 rna ? GO:0002181 ... P49207 37020024
    63 8g60:Lg (2.54) BS02 ZN ? GO:0002181 ... P49207 37020024
    64 8g60:Lg (2.54) BS03 MG ? GO:0002181 ... P49207 37020024
    65 8g60:Lh (2.54) BS01 rna ? GO:0000463 ... P42766 37020024
    66 8g60:Lh (2.54) BS02 rna ? GO:0000463 ... P42766 37020024
    67 8g60:Li (2.54) BS01 rna ? GO:0002181 ... Q9Y3U8 37020024
    68 8g60:Lj (2.54) BS01 rna ? GO:0002181 ... P61927 37020024
    69 8g60:Lj (2.54) BS02 rna ? GO:0002181 ... P61927 37020024
    70 8g60:Lj (2.54) BS03 ZN ? GO:0002181 ... P61927 37020024
    71 8g60:Lk (2.54) BS01 rna ? GO:0001501 ... P63173 37020024
    72 8g60:Ll (2.54) BS01 rna ? GO:0002181 ... P62891 37020024
    73 8g60:Ll (2.54) BS02 rna ? GO:0002181 ... P62891 37020024
    74 8g60:Lm (2.54) BS01 rna N/A GO:0003735 ... N/A 37020024
    75 8g60:Lm (2.54) BS02 ZN N/A GO:0003735 ... N/A 37020024
    76 8g60:Lo (2.54) BS01 rna ? GO:0003735 ... J3KQN4 37020024
    77 8g60:Lo (2.54) BS02 rna ? GO:0003735 ... J3KQN4 37020024
    78 8g60:Lo (2.54) BS03 ZN ? GO:0003735 ... J3KQN4 37020024
    79 8g60:Lp (2.54) BS01 rna ? GO:0002181 ... P61513 37020024
    80 8g60:Lp (2.54) BS02 ZN ? GO:0002181 ... P61513 37020024
    81 8g60:Lq (2.54) BS01 rna ? GO:0000027 ... P05388 37020024
    82 8g60:Lr (2.54) BS01 rna ? GO:0002181 ... P46779 37020024
    83 8g60:Lz (2.54) BS01 rna ? GO:0002181 ... P62906 37020024
    84 8g60:SA (2.54) BS01 rna ? GO:0000028 ... P08865 37020024
    85 8g60:SB (2.54) BS01 rna ? GO:0002181 ... P61247 37020024
    86 8g60:SC (2.54) BS01 rna ? GO:0002181 ... P15880 37020024
    87 8g60:SD (2.54) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37020024
    88 8g60:SE (2.54) BS01 rna ? GO:0002181 ... P62701 37020024
    89 8g60:SF (2.54) BS01 rna ? GO:0000028 ... P46782 37020024
    90 8g60:SF (2.54) BS02 MG ? GO:0000028 ... P46782 37020024
    91 8g60:SG (2.54) BS01 rna ? GO:0000082 ... P62753 37020024
    92 8g60:SH (2.54) BS01 rna ? GO:0001843 ... P62081 37020024
    93 8g60:SI (2.54) BS01 rna ? GO:0000462 ... P62241 37020024
    94 8g60:SI (2.54) BS02 rna ? GO:0000462 ... P62241 37020024
    95 8g60:SJ (2.54) BS01 rna ? GO:0002181 ... P46781 37020024
    96 8g60:SK (2.54) BS01 rna ? GO:0002181 ... P46783 37020024
    97 8g60:SL (2.54) BS01 rna ? GO:0002181 ... P62280 37020024
    98 8g60:SM (2.54) BS01 rna ? GO:0002181 ... P25398 37020024
    99 8g60:SN (2.54) BS01 rna ? GO:0002181 ... P62277 37020024
    100 8g60:SO (2.54) BS01 rna ? GO:0000028 ... P62263 37020024
    101 8g60:SP (2.54) BS01 rna ? GO:0000028 ... P62841 37020024
    102 8g60:SP (2.54) BS02 rna ? GO:0000028 ... P62841 37020024
    103 8g60:SQ (2.54) BS01 rna ? GO:0000462 ... P62249 37020024
    104 8g60:SR (2.54) BS01 rna ? GO:0002181 ... P08708 37020024
    105 8g60:SS (2.54) BS01 rna ? GO:0002181 ... P62269 37020024
    106 8g60:SS (2.54) BS02 rna ? GO:0002181 ... P62269 37020024
    107 8g60:SS (2.54) BS03 rna ? GO:0002181 ... P62269 37020024
    108 8g60:SS (2.54) BS04 MG ? GO:0002181 ... P62269 37020024
    109 8g60:ST (2.54) BS01 rna ? GO:0000028 ... P39019 37020024
    110 8g60:SU (2.54) BS01 rna ? GO:0002181 ... P60866 37020024
    111 8g60:SW (2.54) BS01 rna ? GO:0002181 ... P62244 37020024
    112 8g60:SX (2.54) BS01 rna N/A GO:0003735 ... N/A 37020024
    113 8g60:SY (2.54) BS01 rna ? GO:0002181 ... P62847 37020024
    114 8g60:SZ (2.54) BS01 rna ? GO:0002181 ... P62851 37020024
    115 8g60:SZ (2.54) BS02 rna ? GO:0002181 ... P62851 37020024
    116 8g60:Sa (2.54) BS01 rna ? GO:0002181 ... P62854 37020024
    117 8g60:Sa (2.54) BS02 ZN ? GO:0002181 ... P62854 37020024
    118 8g60:Sb (2.54) BS01 rna ? GO:0000028 ... P42677 37020024
    119 8g60:Sc (2.54) BS01 rna ? GO:0000028 ... P62857 37020024
    120 8g60:Sd (2.54) BS01 rna ? GO:0002181 ... P62273 37020024
    121 8g60:Sd (2.54) BS02 MG ? GO:0002181 ... P62273 37020024
    122 8g60:Sd (2.54) BS03 ZN ? GO:0002181 ... P62273 37020024
    123 8g60:Se (2.54) BS01 rna ? GO:0002181 ... P62861 37020024
    124 8g60:Sf (2.54) BS01 rna ? GO:0002181 ... P62979 37020024
    125 8g60:Sg (2.54) BS01 rna ? GO:0001891 ... P63244 37020024
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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