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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fzd:1 (3.1) BS01 rna N/A N/A N/A 39030416
    2 8fzd:2 (3.1) BS01 rna N/A N/A N/A 39030416
    3 8fzd:3 (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39030416
    4 8fzd:3 (3.1) BS02 ZN N/A GO:0002181 ... P0A7M9 39030416
    5 8fzd:4 (3.1) BS01 rna N/A N/A N/A 39030416
    6 8fzd:5 (3.1) BS01 rna N/A N/A N/A 39030416
    7 8fzd:6 (3.1) BS01 rna N/A GO:0005840 ... B7MGC4 39030416
    8 8fzd:7 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39030416
    9 8fzd:8 (3.1) BS01 rna N/A GO:0005737 ... A0A0E2L017 39030416
    10 8fzd:8 (3.1) BS02 ZN N/A GO:0005737 ... A0A0E2L017 39030416
    11 8fzd:C (3.1) BS01 rna N/A GO:0000027 ... P60422 39030416
    12 8fzd:C (3.1) BS02 MG N/A GO:0000027 ... P60422 39030416
    13 8fzd:D (3.1) BS01 rna N/A N/A N/A 39030416
    14 8fzd:E (3.1) BS01 rna N/A GO:0003735 ... A1AGK6 39030416
    15 8fzd:F (3.1) BS01 rna N/A GO:0000049 ... A0A140N5A3 39030416
    16 8fzd:F (3.1) BS02 rna N/A GO:0000049 ... A0A140N5A3 39030416
    17 8fzd:F (3.1) BS03 rna N/A GO:0000049 ... A0A140N5A3 39030416
    18 8fzd:G (3.1) BS01 rna N/A GO:0002181 ... C3SR17 39030416
    19 8fzd:H (3.1) BS01 rna N/A N/A N/A 39030416
    20 8fzd:I (3.1) BS01 rna N/A GO:0002181 ... P0A7J3 39030416
    21 8fzd:J (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39030416
    22 8fzd:L (3.1) BS01 rna N/A N/A N/A 39030416
    23 8fzd:M (3.1) BS01 rna N/A GO:0003735 ... S1NW45 39030416
    24 8fzd:M (3.1) BS02 rna N/A GO:0003735 ... S1NW45 39030416
    25 8fzd:N (3.1) BS01 rna N/A GO:0003735 ... Q1R630 39030416
    26 8fzd:O (3.1) BS01 rna N/A N/A N/A 39030416
    27 8fzd:P (3.1) BS01 rna N/A N/A N/A 39030416
    28 8fzd:Q (3.1) BS01 rna N/A N/A N/A 39030416
    29 8fzd:Q (3.1) BS02 rna N/A N/A N/A 39030416
    30 8fzd:R (3.1) BS01 rna N/A N/A N/A 39030416
    31 8fzd:R (3.1) BS02 rna N/A N/A N/A 39030416
    32 8fzd:S (3.1) BS01 rna N/A GO:0000027 ... B7MAS6 39030416
    33 8fzd:T (3.1) BS01 rna N/A GO:0003735 ... C3SSG2 39030416
    34 8fzd:U (3.1) BS01 rna N/A GO:0002181 ... P61175 39030416
    35 8fzd:V (3.1) BS01 rna N/A N/A N/A 39030416
    36 8fzd:W (3.1) BS01 rna N/A N/A N/A 39030416
    37 8fzd:X (3.1) BS01 rna N/A N/A N/A 39030416
    38 8fzd:Y (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39030416
    39 8fzd:Z (3.1) BS01 rna N/A GO:0003735 ... A0A1X3JA73 39030416
    40 8fzd:b (3.1) BS01 rna N/A GO:0000028 ... J7QM75 39030416
    41 8fzd:c (3.1) BS01 rna N/A GO:0003729 ... B7MCS9 39030416
    42 8fzd:d (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39030416
    43 8fzd:e (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39030416
    44 8fzd:f (3.1) BS01 rna N/A GO:0000028 ... C3SFQ7 39030416
    45 8fzd:g (3.1) BS01 rna N/A N/A P02359 39030416
    46 8fzd:g (3.1) BS02 rna N/A N/A P02359 39030416
    47 8fzd:g (3.1) BS03 rna N/A N/A P02359 39030416
    48 8fzd:h (3.1) BS01 rna N/A N/A N/A 39030416
    49 8fzd:i (3.1) BS01 rna N/A N/A N/A 39030416
    50 8fzd:i (3.1) BS02 rna N/A N/A N/A 39030416
    51 8fzd:j (3.1) BS01 rna N/A N/A N/A 39030416
    52 8fzd:k (3.1) BS01 rna N/A GO:0005840 ... A0A0H3PWX2 39030416
    53 8fzd:l (3.1) BS01 rna N/A GO:0000049 ... A0A0F1AUC4 39030416
    54 8fzd:m (3.1) BS01 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    55 8fzd:m (3.1) BS02 rna N/A GO:0000049 ... A0A7U9IV78 39030416
    56 8fzd:n (3.1) BS01 rna N/A N/A N/A 39030416
    57 8fzd:o (3.1) BS01 rna N/A N/A N/A 39030416
    58 8fzd:o (3.1) BS02 rna N/A N/A N/A 39030416
    59 8fzd:p (3.1) BS01 rna N/A GO:0000028 ... C3SYP2 39030416
    60 8fzd:q (3.1) BS01 rna N/A N/A N/A 39030416
    61 8fzd:r (3.1) BS01 rna N/A GO:0003735 ... A0A0E2KXL3 39030416
    62 8fzd:s (3.1) BS01 rna N/A N/A N/A 39030416
    63 8fzd:t (3.1) BS01 rna N/A GO:0000028 ... C3TRH7 39030416
    64 8fzd:u (3.1) BS01 rna N/A GO:0005840 ... A0A0E2L2J1 39030416
    65 8fzd:v (3.1) BS01 rna N/A GO:0003924 ... P0A7I4 39030416
    66 8fzd:w (3.1) BS01 rna N/A GO:0005737 ... C3TCZ2 39030416
    67 8fzd:w (3.1) BS02 rna N/A GO:0005737 ... C3TCZ2 39030416
    68 8fzd:w (3.1) BS03 rna N/A GO:0005737 ... C3TCZ2 39030416
    69 8fzd:w (3.1) BS04 rna N/A GO:0005737 ... C3TCZ2 39030416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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