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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fn2:D (3.4) BS01 rna ? GO:0002181 ... P94270 37907464
    2 8fn2:E (3.4) BS01 rna ? GO:0003735 ... P94267 37907464
    3 8fn2:F (3.4) BS01 rna ? GO:0003735 ... P94268 37907464
    4 8fn2:G (3.4) BS01 rna ? GO:0000049 ... O51443 37907464
    5 8fn2:G (3.4) BS02 rna ? GO:0000049 ... O51443 37907464
    6 8fn2:H (3.4) BS01 rna ? GO:0002181 ... O51446 37907464
    7 8fn2:I (3.4) BS01 rna ? GO:0003735 ... O51139 37907464
    8 8fn2:J (3.4) BS01 rna ? GO:0003735 ... O51352 37907464
    9 8fn2:K (3.4) BS01 rna ? GO:0003735 ... O51354 37907464
    10 8fn2:L (3.4) BS01 rna ? GO:0003729 ... O51314 37907464
    11 8fn2:M (3.4) BS01 rna ? GO:0003735 ... O51441 37907464
    12 8fn2:N (3.4) BS01 rna ? GO:0003735 ... O51450 37907464
    13 8fn2:O (3.4) BS01 rna ? GO:0000049 ... O51438 37907464
    14 8fn2:P (3.4) BS01 rna ? GO:0003735 ... O51456 37907464
    15 8fn2:Q (3.4) BS01 rna ? GO:0003735 ... O51447 37907464
    16 8fn2:Q (3.4) BS02 rna ? GO:0003735 ... O51447 37907464
    17 8fn2:R (3.4) BS01 rna ? GO:0003735 ... O51642 37907464
    18 8fn2:S (3.4) BS01 rna ? GO:0000027 ... O51206 37907464
    19 8fn2:T (3.4) BS01 rna ? GO:0003723 ... O51719 37907464
    20 8fn2:U (3.4) BS01 rna ? GO:0003735 ... P94272 37907464
    21 8fn2:V (3.4) BS01 rna ? GO:0000027 ... P94269 37907464
    22 8fn2:W (3.4) BS01 rna ? GO:0003723 ... O51442 37907464
    23 8fn2:X (3.4) BS01 rna ? GO:0003723 ... O51727 37907464
    24 8fn2:X (3.4) BS02 rna ? GO:0003723 ... O51727 37907464
    25 8fn2:Y (3.4) BS01 rna ? GO:0003735 ... O51721 37907464
    26 8fn2:Y (3.4) BS02 rna ? GO:0003735 ... O51721 37907464
    27 8fn2:Z (3.4) BS01 rna ? GO:0003735 ... O51325 37907464
    28 8fn2:a (3.4) BS01 rna ? GO:0003735 ... O51439 37907464
    29 8fn2:b (3.4) BS01 rna ? GO:0003735 ... A0A0H3C073 37907464
    30 8fn2:b (3.4) BS02 rna ? GO:0003735 ... A0A0H3C073 37907464
    31 8fn2:c (3.4) BS01 rna ? GO:0003735 ... O51247 37907464
    32 8fn2:d (3.4) BS01 rna ? GO:0003735 ... O51646 37907464
    33 8fn2:d (3.4) BS02 ZN ? GO:0003735 ... O51646 37907464
    34 8fn2:e (3.4) BS01 rna ? GO:0003735 ... O51357 37907464
    35 8fn2:f (3.4) BS01 rna ? GO:0003735 ... P29220 37907464
    36 8fn2:g (3.4) BS01 rna ? GO:0003735 ... O51207 37907464
    37 8fn2:h (3.4) BS01 rna ? GO:0003735 ... O51452 37907464
    38 8fn2:h (3.4) BS02 ZN ? GO:0003735 ... O51452 37907464
    39 8fn2:i (3.4) BS01 rna ? N/A O51184 37907464
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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